Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04304 and RBAM_026480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04304___ytcJ.1.9828.seq
# -bsequence dna-align/RBAM_026480___ytcJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04304___ytcJ-RBAM_026480___ytcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04304___ytcJ-RBAM_026480___ytcJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04304___ytcJ
# 2: RBAM_026480___ytcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1703
# Identity: 1142/1703 (67.1%)
# Similarity: 1142/1703 (67.1%)
# Gaps: 220/1703 (12.9%)
# Score: 3686.5
#
#
#=======================================
BSNT_04304___ 1 ATGAAGGCGATATGGCACGGCGGTTTCATTTATACGATGCTCG--AAGAA 48
|||||.|||||.|||||||||||...|||.|||||.|||||.| |||||
RBAM_026480__ 1 ATGAAAGCGATTTGGCACGGCGGCACCATCTATACAATGCTGGACAAGAA 50
BSNT_04304___ 49 ----GGCGATCGGACTGAGGCAGTTTATGTTGAGGATGGTGTTATAAAAG 94
|.| |||||.||..|||||...||.||.||.||..| .||
RBAM_026480__ 51 TCATGTC------ACTGAAGCCATTTATACCGAAGAAGGCGTCGT--CAG 92
BSNT_04304___ 95 GC--ACCGGCAGCTAT----GAACGTTTGAAGGAAAAGTACGGGTCACCG 138
|| ||.||||||| | || |.|..||||||.| |||||.||.||.
RBAM_026480__ 93 GCAGACGGGCAGCT-TCCGGGA--GCTCCAAGGAACA-TACGGTTCGCCT 138
BSNT_04304___ 139 GAAACAGAAGAAATCAGCCTGA-----ACGGTGCAGTGATGTTCCCCGGT 183
||.||.||.|||||| || |.||.||.||.||||||||.||.
RBAM_026480__ 139 GATACGGAGGAAATC-----GATTTACATGGGGCTGTCATGTTCCCGGGG 183
BSNT_04304___ 184 TTTGTTGACAGCCACCTACATTTGATCGGCCACGGTGAGAAACAGCTTCA 233
|||...|||||.||..|.|||||.|||||.|||||.||.||||||||||.
RBAM_026480__ 184 TTTACGGACAGTCATATGCATTTAATCGGACACGGGGAAAAACAGCTTCG 233
BSNT_04304___ 234 GCTCGATCTGTCCGCA-CTGACGTCGAAAGATGCAATTTTACAGGCTGCG 282
.||||||.||| |||| ||||||||.|||||.||.||..|.|.|||.||.
RBAM_026480__ 234 CCTCGATTTGT-CGCAGCTGACGTCAAAAGAAGCGATACTGCGGGCCGCA 282
BSNT_04304___ 283 AAGGAAAGAGAGCGGCAGCTTCCTAAA----AA-----CGATTGGCTCAT 323
||.|||..|||||| |.|| || |||.|||||.||
RBAM_026480__ 283 AAAGAAGCAGAGCG---------TGAATTGGAAGATGGCGAATGGCTGAT 323
BSNT_04304___ 324 TGGAGAGGGCTGGAATGAAAATCAGTTTGAGACA-CCTGACTACTTGACT 372
.||.||.||||||.|||||||||.|||||| ||| ||.||.|||.|.||.
RBAM_026480__ 324 CGGCGAAGGCTGGGATGAAAATCTGTTTGA-ACAGCCGGATTACGTCACG 372
BSNT_04304___ 373 AAGCATGATCTTGATCGCCTGTTTCCAGACAGACCCGTCTTGCTCAAGCG 422
||||||||.|||||.|..||.|||||.|||.|.||||||.||||.|||||
RBAM_026480__ 373 AAGCATGACCTTGACCCGCTCTTTCCCGACCGCCCCGTCCTGCTGAAGCG 422
BSNT_04304___ 423 TATATGCCGGCATGCAATAGCTGTCAATTCTGCGGCTCTTCAAGCAGCGG 472
..||||||||||.||....||.||.|||||.||.||..|.|..||.||||
RBAM_026480__ 423 GGTATGCCGGCACGCCGCGGCGGTTAATTCGGCCGCATTGCGCGCGGCGG 472
BSNT_04304___ 473 GAATTTCAA--GAAATACTCCTGACCCTGACGGCGGAGTCATCGTAAAAG 520
|||||.||| ||| ||.|||||.||..|||||||..|.|||||....|
RBAM_026480__ 473 GAATTACAAACGAA--ACACCTGATCCAAACGGCGGGATTATCGTCCGGG 520
BSNT_04304___ 521 ATGCAAATGGAGAGCCGTCCGGACTCCTGTTTGATAAGGCGCAGGATTTG 570
|.|..|..|| .|||.|.||.||.|||.|.|||||.||.||.|| |
RBAM_026480__ 521 ACGGCACCGG---TCCGACAGGCCTTCTGCTGGATAAAGCCCAAGA---G 564
BSNT_04304___ 571 ATTCTGA---AGGCTGTCCCGCCAGTCTCTCAACACTATGTTGATGAGGC 617
.||.||| ||||..|.|||||.|||||.|..|||||||| |
RBAM_026480__ 565 CTTGTGACACAGGCCCTGCCGCCCGTCTCACTTCACTATGT--------C 606
BSNT_04304___ 618 ATTAACG---GCT-------GCAATAAAGGATTGCTGGACAAAAGGCCTG 657
| |||| ||| ||.||.|.|||.||||||.|||||||||||
RBAM_026480__ 607 A--AACGCGCGCTTCAAACGGCGATTACGGACTGCTGGTCAAAAGGCCTG 654
BSNT_04304___ 658 ACGGGCGGTCATTCGGAAGACTTGTCCTATTATGGTGATG-TTTCGGTGC 706
||.|||||.|||||.|||||..||.|.||.||.||.||.| .|.||.|.|
RBAM_026480__ 655 ACAGGCGGGCATTCAGAAGATCTGGCATACTACGGAGACGCGTCCGTTCC 704
BSNT_04304___ 707 CGATGAAAGCTTATGAG-----AAAGCTGTTGCTGGCGGAAAG------- 744
||.|| ..||.||.||| || |.||| ||
RBAM_026480__ 705 CGTTG-CCGCGTACGAGTCATTAA--------CCGGC----AGCGGCCTT 741
BSNT_04304___ 745 TATCCGTTTCGCTGTCATTTGCTCGTTCATCATGAAGCGGTCGATCGATG 794
|||||.||||||...|||.|||||||.|||||.|||||.|||||..|.|
RBAM_026480__ 742 TATCCTTTTCGCGCCCATCTGCTCGTACATCACGAAGCCGTCGACAGCT- 790
BSNT_04304___ 795 GGAGCAG--CTGGATAAGCCGTCCGGCCCGTATGTGGAGTTCGGTGCTAT 842
||||| | ||||||||..||.|.||.||.|||.||||.|.|||.||.||
RBAM_026480__ 791 GGAGC-GCTCTGGATAAATCGACTGGACCTTATCTGGAATACGGAGCGAT 839
BSNT_04304___ 843 GAAAATCTTTGCGGACGGGGCGCTTGGCGGGAGAACGGCTTTATTGAAAG 892
||||||.|||||.|||||.|||||.||.||.|||||.|||.||||||||.
RBAM_026480__ 840 GAAAATTTTTGCTGACGGCGCGCTCGGAGGCAGAACCGCTCTATTGAAAA 889
BSNT_04304___ 893 AACCATATCAGGATGATCCATCAACAAAT------GGTGTTCAGGTTCAC 936
|.||.||.||.||||||||.|| | ||.||||||||.||.
RBAM_026480__ 890 AGCCTTACCATGATGATCCGTC------TGTTTCCGGCGTTCAGGTGCAT 933
BSNT_04304___ 937 GATGACGAAACCCTTGGCCGGCTC------ATTCGCAAAGCGAGAGAAAA 980
|||||||||||.|||| |.|||| || |||||||||||.||
RBAM_026480__ 934 GATGACGAAACACTTG--CCGCTCTTGTTTAT----AAAGCGAGAGAGAA 977
BSNT_04304___ 981 AGGGATGGAGGTTGCTGTTCATGCAATCGGCGATCTTGCTTTTGAAAAAG 1030
||||||||||.|.||.||.||.||.||.|||||.|||||.||||||||.|
RBAM_026480__ 978 AGGGATGGAGATCGCCGTGCACGCGATTGGCGACCTTGCATTTGAAAAGG 1027
BSNT_04304___ 1031 TGCTGAACGCAATAGAAAAGCATCCGCCCAAAAACGGCCGGCATGATCGG 1080
|||||.|.|..||.||||...|.|||.|.||...|||.|.||.|||.|||
RBAM_026480__ 1028 TGCTGGATGTTATCGAAAGATACCCGGCAAAGCCCGGACAGCTTGACCGG 1077
BSNT_04304___ 1081 CTTATTCATGCCCAAGTGCTTGATAACGAATTAATCGAGAGAGCAGCACG 1130
||.||||||||.|||||..|.|||.|||.|||.||.||||||||.||.||
RBAM_026480__ 1078 CTCATTCATGCGCAAGTATTAGATGACGGATTGATTGAGAGAGCCGCCCG 1127
BSNT_04304___ 1131 CATGCCGATCGCACTTGACCTTCAGCCGCACTTCGTTGCAAGCGACTTTC 1180
..|||||||||.||||||.|||||||||||.||.||.||.||.||.||||
RBAM_026480__ 1128 GCTGCCGATCGGACTTGATCTTCAGCCGCATTTTGTGGCCAGTGATTTTC 1177
BSNT_04304___ 1181 CGTGGGTCATTGACCGTCTCGGAAAAGACCGGATGAAGACTGCATTTGCC 1230
|||||||.||||||.|.||||||.||||.||||||||.||.||.||.|||
RBAM_026480__ 1178 CGTGGGTGATTGACAGGCTCGGAGAAGAGCGGATGAAAACGGCTTTCGCC 1227
BSNT_04304___ 1231 TGGAAAACCCTCATATCTAAAGGCATTTTATGCGCGGGCGGTTCAGACGC 1280
||||||||.||..|.||.|||||..|..|.|||||.||.||||||||.||
RBAM_026480__ 1228 TGGAAAACACTGCTGTCAAAAGGGCTGCTGTGCGCCGGAGGTTCAGATGC 1277
BSNT_04304___ 1281 CCCGATTGAGCCTGTTGATCCGCTTCTAGGGATCCAGTCCGCGGTCCTCC 1330
||||||.||.||.|..|||||||||||.||.||.||.||.||.||.||||
RBAM_026480__ 1278 CCCGATAGAACCGGCCGATCCGCTTCTGGGTATTCAATCGGCTGTGCTCC 1327
BSNT_04304___ 1331 GGAAAAGCAGTCATGAGCA-----AAACGGGCCAAGCTATAATGAAAGTG 1375
|.|..|||| |..|||| || ||.||...||||.||||||..|
RBAM_026480__ 1328 GTACGAGCA---AACAGCACCCGGAA--GGTCCGGCCTATTATGAAAAAG 1372
BSNT_04304___ 1376 AATGTTTACCT----GTATATGAAGCGATAAAGCTTTATACAGAAGGTAG 1421
|.|| ||| ||.||.|||||.||..|||||||.||.||.||.||
RBAM_026480__ 1373 AGTG----CCTGACCGTGTACGAAGCCATTCAGCTTTACACGGAGGGAAG 1418
BSNT_04304___ 1422 CGCCGGTATCATTTATAAAGAGAAGTCA----CGCGGAAAAATTGCGGA- 1466
|||.|..|||||..||||||| .|| |||||| ||||
RBAM_026480__ 1419 CGCGGCCATCATCCATAAAGA----ACATAGCCGCGGA-------CGGAT 1457
BSNT_04304___ 1467 ------AGGCTATGACGCGGATTTTACAGTTCTCAGTGGTGATCCGTTTG 1510
.||||||||.||.||.|||||.||.|||||.|||||||||||
RBAM_026480__ 1458 CGCCCCCGGCTATGATGCCGACTTTACCGTACTCAGCGGTGATCCGTT-- 1505
BSNT_04304___ 1511 CCATTGAC---CCCG-CACAGCTTCATCTTTTAGAGATTAAA-------A 1549
|| .||| |||| .|.|||||||| || |||..| |
RBAM_026480__ 1506 -CA-GGACGGACCCGAAAAAGCTTCAT------GA-ATTGGAAGCTGTCA 1546
BSNT_04304___ 1550 AAACCGTGATTAACGGCCAGATTGTATATGAGAAA------------TCA 1587
|||||||..|...|||||..||.||||||||.||| |.|
RBAM_026480__ 1547 AAACCGTCGTCGGCGGCCGTATCGTATATGAAAAAGAGGACAGGCAGTGA 1596
BSNT_04304___ 1588 TAA 1590
RBAM_026480__ 1596 --- 1596
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