Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04239 and RBAM_026070

See DNA alignment / Visit BSNT_04239 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence pep-align/BSNT_04239___ytcD.1.9828.seq
#    -bsequence pep-align/RBAM_026070___ytcD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04239___ytcD-RBAM_026070___ytcD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04239___ytcD-RBAM_026070___ytcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04239___ytcD
# 2: RBAM_026070___ytcD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 128
# Identity:     102/128 (79.7%)
# Similarity:   109/128 (85.2%)
# Gaps:           2/128 ( 1.6%)
# Score: 523.0
# 
#
#=======================================

BSNT_04239___      1 MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKM     50
                     |.||||||||||.||||||||||||||||..|||||||||||||:|||||
RBAM_026070__      1 MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKM     50

BSNT_04239___     51 LTQQLRELEADSVINRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGAN    100
                     |||||||||||.||||||||||||||||||||||.|||.||:.||.|||.
RBAM_026070__     51 LTQQLRELEADGVINRIVYNQVPPKVEYELSEYGHSLERILNALCDWGAM    100

BSNT_04239___    101 HINRVYGDTFSVLEESVLNDKLKQES--    126
                     ||.:.||:..||||:|:||||.|:..  
RBAM_026070__    101 HIAKRYGEVSSVLEDSILNDKFKEPGQI    128


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