Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04208 and RBAM_025890

See DNA alignment / Visit BSNT_04208 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence pep-align/BSNT_04208___ysdB.1.9828.seq
#    -bsequence pep-align/RBAM_025890___ysdB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04208___ysdB-RBAM_025890___ysdB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04208___ysdB-RBAM_025890___ysdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04208___ysdB
# 2: RBAM_025890___ysdB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 130
# Identity:     105/130 (80.8%)
# Similarity:   113/130 (86.9%)
# Gaps:           0/130 ( 0.0%)
# Score: 556.0
# 
#
#=======================================

BSNT_04208___      1 MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNT     50
                     |.:.||||:||||..|.||..||:.|||||||:||||||:||.||||.||
RBAM_025890__      1 MAITVLRIVLLALLIYFIYMGVKFYANPKRRLRLAQSKENFYFIDEQKNT     50

BSNT_04208___     51 RKNFQLTYKGVLFEGEKHIPSKDHPLFIHTIFVWTESPEKLKHFSAKDFE    100
                     |||.||||||||||||||||||||||||||||||||:||||..|||.|||
RBAM_025890__     51 RKNLQLTYKGVLFEGEKHIPSKDHPLFIHTIFVWTENPEKLNRFSAGDFE    100

BSNT_04208___    101 NIEEKVLERYPNCKIDWDQPIKLAKKAEER    130
                     .:|:||||||||||||||||||.||||.||
RBAM_025890__    101 EVEKKVLERYPNCKIDWDQPIKKAKKAGER    130


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