Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04208 and RBAM_025890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04208___ysdB.1.9828.seq
# -bsequence dna-align/RBAM_025890___ysdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04208___ysdB-RBAM_025890___ysdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04208___ysdB-RBAM_025890___ysdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04208___ysdB
# 2: RBAM_025890___ysdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 401
# Identity: 312/401 (77.8%)
# Similarity: 312/401 (77.8%)
# Gaps: 16/401 ( 4.0%)
# Score: 1184.0
#
#
#=======================================
BSNT_04208___ 1 ATGTTTGTCAT---GGTTCTAAGGATTATTTTGCTTGCACTTTTTGCTTA 47
||| |.||| .||..|.||||||.|.||||||||||||.||..|||
RBAM_025890__ 1 ATG---GCCATTACAGTATTGAGGATTGTCTTGCTTGCACTTCTTATTTA 47
BSNT_04208___ 48 TTGTATTTATGCCGTG---GTCAAATATGT-CGCGAATCCTAAGAGAAGG 93
||.|||||| |.|| ||||||| |.| |||.||.||.||.||||||
RBAM_025890__ 48 TTTTATTTA---CATGGGCGTCAAAT-TCTACGCAAACCCGAAAAGAAGG 93
BSNT_04208___ 94 CTTAAGCTGGCCCAATCAAAAGAACATTTTTATATTATTGATGAACAAAA 143
||.|..|||||.|||||||||||..||||||||.|||||||.|||||.||
RBAM_025890__ 94 CTCAGACTGGCGCAATCAAAAGAGAATTTTTATTTTATTGACGAACAGAA 143
BSNT_04208___ 144 CAATACCCGGAAGAATTTTCAGCTGACGTATAAAGGCGTGCTGTTTGAGG 193
.||.||.||.||.|||.|.|||||.||.||||||||.|||||.|||||.|
RBAM_025890__ 144 AAACACGCGAAAAAATCTCCAGCTTACTTATAAAGGAGTGCTCTTTGAAG 193
BSNT_04208___ 194 GAGAAAAGCATATTCCTTCCAAGGATCATCCGCTGTTTATTCACACGATC 243
|||||||||||||.||||||||.||||||||||||||||||||.|||||.
RBAM_025890__ 194 GAGAAAAGCATATCCCTTCCAAAGATCATCCGCTGTTTATTCATACGATA 243
BSNT_04208___ 244 TTTGTCTGGACAGAATCTCCTGAGAAGCTGAAACATTTCTCTGCAAAAGA 293
|||||.|||||.|||..|||.||.||||||||.|..||.||||||...||
RBAM_025890__ 244 TTTGTATGGACCGAAAATCCGGAAAAGCTGAACCGCTTTTCTGCAGGTGA 293
BSNT_04208___ 294 TTTTG-AGAACATTGAAGAAAAAGTACTGGAACGATATCCAAATTGTAAG 342
||||| |||| .|.|||.||||.|||.||||.||.|||||.|||||.|||
RBAM_025890__ 294 TTTTGAAGAA-GTCGAAAAAAAGGTATTGGAGCGGTATCCGAATTGCAAG 342
BSNT_04208___ 343 ATTGACTGGGACCAGCCCATTAAACTCGCAAAAAAAGCAGAAGAGCGTTA 392
|||||.||||||||||||||.|||...||.||||||||||..|||||.||
RBAM_025890__ 343 ATTGATTGGGACCAGCCCATCAAAAAAGCGAAAAAAGCAGGCGAGCGATA 392
BSNT_04208___ 393 A 393
|
RBAM_025890__ 393 A 393
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