Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04204 and RBAM_025870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence pep-align/BSNT_04204.1.9828.seq
# -bsequence pep-align/RBAM_025870___abnA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04204-RBAM_025870___abnA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04204-RBAM_025870___abnA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04204
# 2: RBAM_025870___abnA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity: 159/321 (49.5%)
# Similarity: 169/321 (52.6%)
# Gaps: 147/321 (45.8%)
# Score: 885.0
#
#
#=======================================
BSNT_04204 0 -------------------------------------------------- 0
RBAM_025870__ 1 MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGN 50
BSNT_04204 0 -------------------------------------------------- 0
RBAM_025870__ 51 TWYAFGTGLEGERGLRVLKAGSGGVWTVQKSIFTSPLSWWGNYVPNYGLN 100
BSNT_04204 1 -----------------------------------------------MIR 3
:||
RBAM_025870__ 101 QWAPDVQYFNGKYWLYYAVSSFGKNTSAIGLASSTSLSSGNWKDEGLVIR 150
BSNT_04204 4 STSSNNYNAIDPELTFDKDGNPWLAFGSFWSGIKLTKLDKNTMKPTGSLY 53
|||::||||||||||.||||||||||||||||||||||||||||||||||
RBAM_025870__ 151 STSADNYNAIDPELTIDKDGNPWLAFGSFWSGIKLTKLDKNTMKPTGSLY 200
BSNT_04204 54 SIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKN 103
|||||||||||||||.:|||||||||||||||||.||||||||||||||:
RBAM_025870__ 201 SIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNSTYKIAYGRSKS 250
BSNT_04204 104 ITGPYLDKSGKSMLEGGGTILDSGNDQWKGPGGQDIVNGNILVRHAYDAN 153
|||||||||||||.||||||||||||:||||||||||||||||||||||.
RBAM_025870__ 251 ITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAE 300
BSNT_04204 154 NNGIPKLLINDLNWSSGWPSY 174
|:||||:||||::||||||||
RBAM_025870__ 301 NSGIPKMLINDIDWSSGWPSY 321
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