Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04181 and RBAM_025720

See DNA alignment / Visit BSNT_04181 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence pep-align/BSNT_04181___ysgA.1.9828.seq
#    -bsequence pep-align/RBAM_025720___ysgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04181___ysgA-RBAM_025720___ysgA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04181___ysgA-RBAM_025720___ysgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: RBAM_025720___ysgA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     196/248 (79.0%)
# Similarity:   222/248 (89.5%)
# Gaps:           0/248 ( 0.0%)
# Score: 1020.0
# 
#
#=======================================

BSNT_04181___      1 MKQIESAKNQKVKDWKKLHTKKERTKTNTFLIEGEHLVEEALKSPGIVKE     50
                     ||:|:|||||||||||||||||||.||||||||||||.||||||.|.|||
RBAM_025720__      1 MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKE     50

BSNT_04181___     51 ILVKDETRIPSDLETGIQCYMLSEDAFSAVTETETPQQIAAVCHMPEEKL    100
                     |||.||:.||:||:..|.||:||||||||||||||||:||||||||:::.
RBAM_025720__     51 ILVNDESAIPADLDMSIPCYVLSEDAFSAVTETETPQRIAAVCHMPDKRP    100

BSNT_04181___    101 ATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRS    150
                     ...:::|||||||||||||||||||||||:||||||:||||.:|||||||
RBAM_025720__    101 DQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRS    150

BSNT_04181___    151 AQGSHFHIPVVRRNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFA    200
                     |||||||||:::|.|..:..|||::||.:|||||:|||.||.:...||||
RBAM_025720__    151 AQGSHFHIPILKRPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFA    200

BSNT_04181___    201 LIVGNEGAGVDAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLRG    248
                     ||||||||||||.||:||||||||||||||||||||||||||||||||
RBAM_025720__    201 LIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLRG    248


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