Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04181 and RBAM_025720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04181___ysgA.1.9828.seq
# -bsequence dna-align/RBAM_025720___ysgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04181___ysgA-RBAM_025720___ysgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04181___ysgA-RBAM_025720___ysgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: RBAM_025720___ysgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity: 565/778 (72.6%)
# Similarity: 565/778 (72.6%)
# Gaps: 62/778 ( 8.0%)
# Score: 2009.5
#
#
#=======================================
BSNT_04181___ 1 GTGAAACAAATAGAATCGGCAAAAAACCAAAAAGTGAAGGATTGGAAAAA 50
|||||||.|||.||.||.|||||||||||||||||||||||.||||||||
RBAM_025720__ 1 GTGAAACGAATCGACTCTGCAAAAAACCAAAAAGTGAAGGACTGGAAAAA 50
BSNT_04181___ 51 GCTTCACACAAAAAAAGAACGAACAAAAACAAATACATTTCTGATAGAGG 100
.|||||||||||||||||..||...|||||.|||||||||||||||||.|
RBAM_025720__ 51 ACTTCACACAAAAAAAGAGAGACTTAAAACGAATACATTTCTGATAGAAG 100
BSNT_04181___ 101 GAGAACACCTCGTTGAAGAGGCGTTGA----AAAGCCCGGGCATTGTGAA 146
||||.||.||.|..|||||.|||.|.| ||| |||.|..||.||
RBAM_025720__ 101 GAGAGCATCTGGCAGAAGAAGCGCTCAAATCAAA----GGGAACGGTAAA 146
BSNT_04181___ 147 AGAAATCCTTGTAAAGGATGAAACGAG---GATTCCTTCAGATCTTGAGA 193
||||||.||.|||||.||||| ||| .||.||..|.|||||.||.|
RBAM_025720__ 147 AGAAATTCTCGTAAACGATGA---GAGCGCCATCCCGGCCGATCTGGACA 193
BSNT_04181___ 194 CTG-GTATCCAGTGCTATATGCTGAGTGAAGATGCGTTTTCAGCTGTGAC 242
|| |.||.|.||||||..|||||||.|||||.|||||||||||.|||||
RBAM_025720__ 194 -TGAGCATTCCGTGCTACGTGCTGAGCGAAGACGCGTTTTCAGCCGTGAC 242
BSNT_04181___ 243 TGAAACCGAAACGCCGCAGCAGATTGCCGCTGTGTGCCATATGCCTGA-- 290
.|||||.|||||||||||||.|||.|||||.||.|||||||||||.||
RBAM_025720__ 243 GGAAACGGAAACGCCGCAGCGGATCGCCGCGGTCTGCCATATGCCGGATA 292
BSNT_04181___ 291 -------AGAAAAGCTGGCAA-CGGCACGCAAGGTGCTGCTGATTGACGC 332
.||..||||| || |||| ||||.||||||||.||
RBAM_025720__ 293 AGCGGCCTGATCAGCTG--AAGCGGC--------TGCTTCTGATTGATGC 332
BSNT_04181___ 333 TGTTCAAGATCCGGGAAACCTTGGCACAATGATTCGAACGGCTGATGCGG 382
.||.||.||.|||||.||..|.||.||||||||..|||||||.|||||.|
RBAM_025720__ 333 CGTACAGGACCCGGGGAATTTAGGAACAATGATCAGAACGGCAGATGCCG 382
BSNT_04181___ 383 CCGGTTTGGATGCGGTTGTACTCGGTGACGGCACGGCGGACGCCTTTAAC 432
|.||..|.||.||.|||||.||.|||||.||.||.||.|||.|.|..|||
RBAM_025720__ 383 CGGGAATCGACGCCGTTGTCCTTGGTGAGGGAACAGCAGACCCGTACAAC 432
BSNT_04181___ 433 GGAAAAACACTGCGATCTGCTCAAGGATCTCACTTCCATATTCCTGTTGT 482
||||||||.|||||.||.||.|||||||||||.||.||||||||..||.|
RBAM_025720__ 433 GGAAAAACGCTGCGTTCAGCACAAGGATCTCATTTTCATATTCCCATTTT 482
BSNT_04181___ 483 GAGAAGAAACCTGC-CTTCATATGTGGAC----GAATTGAAGGCAGAGGG 527
|||||.|.| |||.||..||..|| ||..||||..||.|.||
RBAM_025720__ 483 -----GAAACGTCCGCTTGATGAGTTTACCGCTGAGCTGAAATCACAAGG 527
BSNT_04181___ 528 CGT----AAAAGTATACGGCACGGCGCTGCAAAACGGAGCGCCTTACCA- 572
||| | |.||||||||||||||..|||||||.|||.||||.||
RBAM_025720__ 528 CGTCGCGA----TCTACGGCACGGCGCTTGAAAACGGTGCGGCTTATCAA 573
BSNT_04181___ 573 --GGAGATTCCTCAGTCTGAATCCTTTGCGCTCATTGTAGGAAATGAAGG 620
.|.||..|||.| .|||||.||.|||.|.||.||.||.||.||.||
RBAM_025720__ 574 AGCGTGAAGCCTGA---AGAATCGTTCGCGTTAATCGTCGGGAACGAGGG 620
BSNT_04181___ 621 TGCAGGGGTGGATG-CTGCATTGCTGGAAAAAACGGATTTGAACCTGTAC 669
.||.||.|||||.| |.||.|| |||.|||||||||||.|.|||||||||
RBAM_025720__ 621 GGCGGGAGTGGACGCCGGCCTT-CTGCAAAAAACGGATCTCAACCTGTAC 669
BSNT_04181___ 670 GTGCCGCTTTACGGACAGGCTGAATCACTAAACGTTGCGGTTGCGGCTGC 719
||.|||||.|||||.|||||.|||||.||.||.||.|||||.|||||.||
RBAM_025720__ 670 GTTCCGCTGTACGGGCAGGCGGAATCGCTGAATGTGGCGGTAGCGGCCGC 719
BSNT_04181___ 720 CATCCTCGTGTATCACTTGCGAGGATAG 747
|||||||||.|||||..|..||||||||
RBAM_025720__ 720 CATCCTCGTTTATCATCTCAGAGGATAG 747
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