Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04148 and RBAM_025500

See DNA alignment / Visit BSNT_04148 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence pep-align/BSNT_04148___sdhB.1.9828.seq
#    -bsequence pep-align/RBAM_025500___sdhB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04148___sdhB-RBAM_025500___sdhB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04148___sdhB-RBAM_025500___sdhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04148___sdhB
# 2: RBAM_025500___sdhB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     238/253 (94.1%)
# Similarity:   245/253 (96.8%)
# Gaps:           1/253 ( 0.4%)
# Score: 1275.0
# 
#
#=======================================

BSNT_04148___      1 MSEQKTIRFIITRQDTADSTPYDEEFEIPYRPNLNVISALMEIRRNPVNV     50
                     |||:| ||||||||||.:|.||||||||.||||||||||||||||||||.
RBAM_025500__      1 MSEKK-IRFIITRQDTPESAPYDEEFEINYRPNLNVISALMEIRRNPVNA     49

BSNT_04148___     51 KGEKTTPVTWDMNCLEEVCGACSMVINGKPRQSCTALIDQLEQPIRLKPM    100
                     ||||||||.|||||||||||||||||||:||||||||||:||||||||||
RBAM_025500__     50 KGEKTTPVAWDMNCLEEVCGACSMVINGRPRQSCTALIDKLEQPIRLKPM     99

BSNT_04148___    101 KTFPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMPEKRRQWAY    150
                     ||||||||||||||||||||||||||:|||||||||||||||||||||||
RBAM_025500__    100 KTFPVVRDLQVDRSRMFDSLKKVKAWVPIDGTYDLGPGPRMPEKRRQWAY    149

BSNT_04148___    151 ELSKCMTCGVCLEACPNVNSKSKFMGPAPMSQVRLFNAHPTGAMNKSERL    200
                     ||||||||||||||||||||||||||||||||||||||||||||||:|||
RBAM_025500__    150 ELSKCMTCGVCLEACPNVNSKSKFMGPAPMSQVRLFNAHPTGAMNKAERL    199

BSNT_04148___    201 EALMDEGGLADCGNSQNCVQSCPKGIPLTTSIAALNRDTNLQAFRNFFGS    250
                     ||||.:|||.||||||||||||||||||||||||||||||||||||||||
RBAM_025500__    200 EALMTDGGLGDCGNSQNCVQSCPKGIPLTTSIAALNRDTNLQAFRNFFGS    249

BSNT_04148___    251 DRV    253
                     |||
RBAM_025500__    250 DRV    252


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