Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04148 and RBAM_025500

See Amino acid alignment / Visit BSNT_04148 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04148___sdhB.1.9828.seq
#    -bsequence dna-align/RBAM_025500___sdhB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04148___sdhB-RBAM_025500___sdhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04148___sdhB-RBAM_025500___sdhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04148___sdhB
# 2: RBAM_025500___sdhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 764
# Identity:     650/764 (85.1%)
# Similarity:   650/764 (85.1%)
# Gaps:           7/764 ( 0.9%)
# Score: 2790.0
# 
#
#=======================================

BSNT_04148___      1 ATGAGTGAACAAAAAACCATACGATTTATTATCACACGTCAAGATACAGC     50
                     |||||||   |.||||..|||||.|||||.||.||||||||.|||||..|
RBAM_025500__      1 ATGAGTG---AGAAAAAGATACGGTTTATCATTACACGTCAGGATACGCC     47

BSNT_04148___     51 CGACAGCACGCCTTACGATGAAGAATTTGAGATTCCA--TACCGCCCGAA     98
                     |||.|||.||||.||||||||||||||.||.||  ||  |||||||||||
RBAM_025500__     48 CGAAAGCGCGCCATACGATGAAGAATTCGAAAT--CAATTACCGCCCGAA     95

BSNT_04148___     99 TCTGAACGTCATTTCCGCTCTGATGGAAATCCGCCGGAATCCGGTTAATG    148
                     .||||||||.||||||||.|||||||||||||||.|.|||||.||.||||
RBAM_025500__     96 CCTGAACGTGATTTCCGCCCTGATGGAAATCCGCAGAAATCCCGTGAATG    145

BSNT_04148___    149 TCAAAGGTGAGAAGACAACCCCTGTCACATGGGATATGAACTGTCTTGAG    198
                     ..|||||.|||||.||.||.||.|||.|||||||.||||||||||||||.
RBAM_025500__    146 CAAAAGGAGAGAAAACCACTCCGGTCGCATGGGACATGAACTGTCTTGAA    195

BSNT_04148___    199 GAAGTATGCGGCGCATGTTCAATGGTCATAAACGGAAAACCCCGCCAATC    248
                     ||||||||||||||.||.||.||||||||.|||||||.|||.|||||.||
RBAM_025500__    196 GAAGTATGCGGCGCCTGCTCCATGGTCATCAACGGAAGACCGCGCCAGTC    245

BSNT_04148___    249 TTGCACGGCGCTTATCGACCAGCTTGAACAGCCGATCCGTTTAAAACCAA    298
                     .||.||||||||.||.||..||||.|||||||||||||||.|.||.||.|
RBAM_025500__    246 ATGTACGGCGCTGATTGATAAGCTGGAACAGCCGATCCGTCTGAAGCCGA    295

BSNT_04148___    299 TGAAAACATTCCCAGTCGTTCGTGATTTGCAGGTTGATCGCAGCAGAATG    348
                     |||||||||||||.||.||.|||||..|.||||||||.||||||||||||
RBAM_025500__    296 TGAAAACATTCCCGGTTGTCCGTGACCTTCAGGTTGACCGCAGCAGAATG    345

BSNT_04148___    349 TTTGATTCATTGAAAAAAGTAAAAGCATGGATACCGATTGACGGTACGTA    398
                     |||||||||.||||||||||.|||||||||.|.|||||||||||.||.||
RBAM_025500__    346 TTTGATTCACTGAAAAAAGTGAAAGCATGGGTGCCGATTGACGGAACTTA    395

BSNT_04148___    399 CGATTTAGGACCGGGGCCGAGAATGCCGGAAAAACGCCGTCAATGGGCAT    448
                     ||||||.||.|||||||||||||||||||||||||||||.||.|||||||
RBAM_025500__    396 CGATTTGGGGCCGGGGCCGAGAATGCCGGAAAAACGCCGCCAGTGGGCAT    445

BSNT_04148___    449 ATGAATTATCAAAATGCATGACATGCGGCGTCTGCCTCGAAGCTTGCCCG    498
                     |||||||.||.||||||||||||||||||||||||||||||||.||||||
RBAM_025500__    446 ATGAATTGTCTAAATGCATGACATGCGGCGTCTGCCTCGAAGCCTGCCCG    495

BSNT_04148___    499 AATGTGAACAGCAAATCGAAGTTCATGGGGCCTGCACCGATGTCGCAAGT    548
                     ||.||.||||||||.|||||.||||||||||||||.||||||||||||||
RBAM_025500__    496 AACGTCAACAGCAAGTCGAAATTCATGGGGCCTGCCCCGATGTCGCAAGT    545

BSNT_04148___    549 CCGCCTGTTTAACGCGCATCCGACAGGCGCCATGAATAAATCTGAACGAT    598
                     .||.|||||||||||.||||||||.||.||.|||||.|||.|.|||||.|
RBAM_025500__    546 TCGTCTGTTTAACGCCCATCCGACGGGTGCGATGAACAAAGCAGAACGTT    595

BSNT_04148___    599 TAGAAGCATTAATGGATGAAGGCGGCCTTGCAGATTGCGGCAACTCGCAA    648
                     |||||||.||||||...||.||||||||.|.|||||||||.||.||.|||
RBAM_025500__    596 TAGAAGCGTTAATGACAGACGGCGGCCTCGGAGATTGCGGGAATTCACAA    645

BSNT_04148___    649 AACTGTGTTCAATCCTGTCCGAAGGGGATTCCGCTTACCACTTCGATTGC    698
                     |||||||||||||||||.|||||.||.|||||||||||.|||||.||.||
RBAM_025500__    646 AACTGTGTTCAATCCTGCCCGAAAGGCATTCCGCTTACGACTTCAATCGC    695

BSNT_04148___    699 AGCCTTGAATAGAGATACAAACTTACAAGCGTTCCGCAATTTCTTCGGAA    748
                     .||.|||||.||||||||.||.||||||||.|||||.|||||||||||||
RBAM_025500__    696 CGCTTTGAACAGAGATACCAATTTACAAGCATTCCGTAATTTCTTCGGAA    745

BSNT_04148___    749 GCGACAGAGTATAA    762
                     ||||||||||||||
RBAM_025500__    746 GCGACAGAGTATAA    759


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.