Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04099 and RBAM_025270

See DNA alignment / Visit BSNT_04099 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence pep-align/BSNT_04099___lonB.1.9828.seq
#    -bsequence pep-align/RBAM_025270___lonB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04099___lonB
# 2: RBAM_025270___lonB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity:     508/552 (92.0%)
# Similarity:   536/552 (97.1%)
# Gaps:           0/552 ( 0.0%)
# Score: 2610.0
# 
#
#=======================================

BSNT_04099___      1 MSWTGIALFIQLFFGIIIGLYFWNLLKNQRTQKVTIDKESKKEMEQLRKM     50
                     |||||||||:||||||:|||||||||||||||||||||||||||||||||
RBAM_025270__      1 MSWTGIALFVQLFFGIVIGLYFWNLLKNQRTQKVTIDKESKKEMEQLRKM     50

BSNT_04099___     51 RAISLSEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPG    100
                     ||||||||||||||||||:|||||||||||||||||||||||||:|||||
RBAM_025270__     51 RAISLSEPLSEKVRPKSFQDIVGQEDGIKALKAALCGPNPQHVIIYGPPG    100

BSNT_04099___    101 VGKTAAARLVLEEAKKHKQSPFKEQAVFVELDATTARFDERGIADPLIGS    150
                     ||||||||||||||||||||||::||||||||||||||||||||||||||
RBAM_025270__    101 VGKTAAARLVLEEAKKHKQSPFQKQAVFVELDATTARFDERGIADPLIGS    150

BSNT_04099___    151 VHDPIYQGAGAMGQAGIPQPKQGAVTHAHGGVLFIDEIGELHPIQMNKML    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_025270__    151 VHDPIYQGAGAMGQAGIPQPKQGAVTHAHGGVLFIDEIGELHPIQMNKML    200

BSNT_04099___    201 KVLEDRKVFLDSAYYSEENTQIPNHIHDIFQNGLPADFRLIGATTRMPNE    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_025270__    201 KVLEDRKVFLDSAYYSEENTQIPNHIHDIFQNGLPADFRLIGATTRMPNE    250

BSNT_04099___    251 IPPAIRSRCLEVFFRELEKDELKTVAKTAADKIEKNISEEGLDLLTSYTR    300
                     |||||||||||||||||||||||.|||.|||||:|.||:|.|.:||:|||
RBAM_025270__    251 IPPAIRSRCLEVFFRELEKDELKIVAKKAADKIQKEISDEALSVLTTYTR    300

BSNT_04099___    301 NGREAVNMIQIAAGMAVTENRKDITIEDIEWVIHSSQLTPKHEQKIGVEP    350
                     |||||||||||||||||||:||:||.||||||:||||||||:||||..||
RBAM_025270__    301 NGREAVNMIQIAAGMAVTEDRKEITTEDIEWVVHSSQLTPKNEQKIADEP    350

BSNT_04099___    351 QVGIVNGLAVYGPNSGSLLEIEVSVTAAQDKGSINITGIAEEESIGSQSK    400
                     ||||||||||||||||:||||||:||.||||||:||||||||||||||||
RBAM_025270__    351 QVGIVNGLAVYGPNSGALLEIEVNVTPAQDKGSLNITGIAEEESIGSQSK    400

BSNT_04099___    401 SIRRKSMAKGSVENVLTVLRTMGMKPSDYDIHINFPGGIPIDGPSAGIAM    450
                     |||||||||||||||||||||||:||||||||:|||||.|||||||||||
RBAM_025270__    401 SIRRKSMAKGSVENVLTVLRTMGIKPSDYDIHVNFPGGGPIDGPSAGIAM    450

BSNT_04099___    451 AAGIFSAIHKIPIDNTVAMTGEISLNGLVKPIGGVIPKIKAAKQSGAKKV    500
                     |||||||||:||||:||||||||||.||||||||||||||||||:|||.|
RBAM_025270__    451 AAGIFSAIHRIPIDHTVAMTGEISLTGLVKPIGGVIPKIKAAKQAGAKTV    500

BSNT_04099___    501 IIPYENQQAILKQIDGIEIIAVKTFQEVLDEILVNPPTEQKPFHIEINKE    550
                     ||||||||:|||:||||.|.||||||||||.|||:||:|||||.|::|||
RBAM_025270__    501 IIPYENQQSILKRIDGITIKAVKTFQEVLDVILVDPPSEQKPFDIQMNKE    550

BSNT_04099___    551 SV    552
                     ||
RBAM_025270__    551 SV    552


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.