Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04099 and RBAM_025270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04099___lonB.1.9828.seq
# -bsequence dna-align/RBAM_025270___lonB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04099___lonB
# 2: RBAM_025270___lonB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1667
# Identity: 1344/1667 (80.6%)
# Similarity: 1344/1667 (80.6%)
# Gaps: 16/1667 ( 1.0%)
# Score: 5408.0
#
#
#=======================================
BSNT_04099___ 1 ATGAGTTGGACAGGGATCGCGTTATTTATTCAGCTGTTTTTTGGGATCAT 50
||||||||||||||||||||.||||||.|.|||||||||||.|||||..|
RBAM_025270__ 1 ATGAGTTGGACAGGGATCGCATTATTTGTACAGCTGTTTTTCGGGATAGT 50
BSNT_04099___ 51 CATCGGTTTGTATTTTTGGAATTTGCTTAAAAATCAAAGGACACAAAAGG 100
||||||.||.||||||||||||.||||.|||||.||..|.||||||||.|
RBAM_025270__ 51 CATCGGATTATATTTTTGGAATCTGCTCAAAAACCAGCGTACACAAAAAG 100
BSNT_04099___ 101 TCACGATAGATAAAGAATCAAAGAAGGAAATGGAGCAGCTTCGGAAAATG 150
|.||||||||||||||||||||.||.||||||||.|||||.||.||||||
RBAM_025270__ 101 TGACGATAGATAAAGAATCAAAAAAAGAAATGGAACAGCTGCGCAAAATG 150
BSNT_04099___ 151 CGTGCTATCAGCTTGTCCGAGCCATTATCTGAGAAGGTCCGCCCCAAAAG 200
||.||.|||||.||.||.||.||.|||||.||.|||||.||.||.|||||
RBAM_025270__ 151 CGCGCCATCAGTTTATCAGAACCTTTATCAGAAAAGGTGCGGCCGAAAAG 200
BSNT_04099___ 201 CTTTAAAGATATCGTCGGACAGGAAGACGGCATTAAAGCATTAAAGGCGG 250
||||.|.||.||.|||||.|||||||||||.||||||||.|||||.||.|
RBAM_025270__ 201 CTTTCAGGACATTGTCGGCCAGGAAGACGGAATTAAAGCGTTAAAAGCAG 250
BSNT_04099___ 251 CTTTATGCGGGCCAAATCCTCAGCATGTGATTGTCTATGGGCCACCGGGA 300
|..|.|||||.||.||.||.|||||.||.|||.|.||.||.||.||||||
RBAM_025270__ 251 CGCTTTGCGGACCGAACCCGCAGCACGTCATTATTTACGGTCCTCCGGGA 300
BSNT_04099___ 301 GTTGGGAAAACGGCTGCTGCGCGGCTTGTGTTGGAAGAAGCAAAAAAACA 350
||.||.|||||||||||.||||||||.||.|||||||||||.||||||||
RBAM_025270__ 301 GTCGGTAAAACGGCTGCGGCGCGGCTGGTATTGGAAGAAGCGAAAAAACA 350
BSNT_04099___ 351 TAAACAATCACCGTTTAAAGAGCAGGCTGTCTTTGTGGAACTCGATGCGA 400
||||||.|||||||||.||.||||||||||.|||||.|||||.|||||||
RBAM_025270__ 351 TAAACAGTCACCGTTTCAAAAGCAGGCTGTTTTTGTTGAACTTGATGCGA 400
BSNT_04099___ 401 CAACAGCCCGTTTTGATGAAAGAGGAATTGCCGATCCGCTCATCGGCTCT 450
|.||.||.||.|||||||||.|.||.||||||||||||||.|||||.||.
RBAM_025270__ 401 CGACCGCGCGGTTTGATGAACGGGGGATTGCCGATCCGCTTATCGGTTCA 450
BSNT_04099___ 451 GTCCATGACCCGATATATCAAGGGGCCGGAGCGATGGGACAGGCTGGGAT 500
||.|||||.|||||.|||||.||.||.||.||||||||.||.||.||.||
RBAM_025270__ 451 GTGCATGATCCGATTTATCAGGGAGCGGGTGCGATGGGCCAAGCAGGCAT 500
BSNT_04099___ 501 TCCGCAGCCGAAGCAGGGAGCTGTCACCCATGCCCATGGCGGTGTGCTGT 550
||||||||||||.|||||.|||||.||||||||.||.|||||.||..|||
RBAM_025270__ 501 TCCGCAGCCGAAACAGGGGGCTGTGACCCATGCTCACGGCGGGGTATTGT 550
BSNT_04099___ 551 TTATTGATGAAATAGGGGAGCTGCATCCTATTCAAATGAATAAAATGCTG 600
|||||||||||||.||.|||||.|||||.|||||.|||||||||||||||
RBAM_025270__ 551 TTATTGATGAAATCGGCGAGCTTCATCCGATTCAGATGAATAAAATGCTG 600
BSNT_04099___ 601 AAGGTGCTTGAGGACAGAAAAGTCTTTTTAGACAGTGCGTATTACAGTGA 650
|||||||||||.||..|||||||.||||||||||||||||||||||||||
RBAM_025270__ 601 AAGGTGCTTGAAGATCGAAAAGTATTTTTAGACAGTGCGTATTACAGTGA 650
BSNT_04099___ 651 GGAAAATACACAAATTCCGAATCATATTCATGATATTTTTCAAAATGGGC 700
.||||||||.|||||.||||||||.|||||||||||||||||||||||||
RBAM_025270__ 651 AGAAAATACGCAAATACCGAATCACATTCATGATATTTTTCAAAATGGGC 700
BSNT_04099___ 701 TGCCGGCTGATTTTCGCTTGATTGGCGCGACCACGAGAATGCCAAACGAA 750
|.|||||.|||||.||.|||||.||.|||||.|||||||||||.||.|||
RBAM_025270__ 701 TTCCGGCAGATTTCCGTTTGATCGGAGCGACAACGAGAATGCCGAATGAA 750
BSNT_04099___ 751 ATTCCGCCAGCTATCAGGTCCCGCTGTCTGGAGGTTTTTTTCCGCGAGCT 800
||||||||.||.|||.|.||.||||||||.||.||.||||||||||||||
RBAM_025270__ 751 ATTCCGCCGGCCATCCGTTCGCGCTGTCTTGAAGTATTTTTCCGCGAGCT 800
BSNT_04099___ 801 TGAAAAGGACGAGCTGAAAACTGTTGCCAAAACAGCAGCGGATAAAATTG 850
.||||||||.||.||.||||..|||||.||||.||||||.||.||||||.
RBAM_025270__ 801 GGAAAAGGATGAACTTAAAATCGTTGCGAAAAAAGCAGCCGACAAAATTC 850
BSNT_04099___ 851 AAAAAAATATCTCCGAAGAAGGCCT-AGATCTTTTGACCAGCTACACACG 899
|.|||.|.||.||.||.||||..|| || |.|..||||||..||.||..|
RBAM_025270__ 851 AGAAAGAGATTTCTGACGAAGCTCTCAG-TGTGCTGACCACATATACGAG 899
BSNT_04099___ 900 GAACGGGCGGGAAGCCGTCAATATGATTCAAATCGCAGCGGGGATGGCTG 949
.|||||.||.|||||||||||||||||.||.|||||.||.||.|||||.|
RBAM_025270__ 900 AAACGGACGTGAAGCCGTCAATATGATCCAGATCGCCGCCGGCATGGCGG 949
BSNT_04099___ 950 TAACGGAGAATCGGAAGGACATTACGATTGAGGATATTGAATGGGTCATT 999
|.||.|||.|..|.||.||.|||||||..||.|||||.||||||||..||
RBAM_025270__ 950 TGACTGAGGACAGAAAAGAAATTACGACAGAAGATATAGAATGGGTTGTT 999
BSNT_04099___ 1000 CACTCCAGTCAGCTTACTCCAAAGCACGAGCAAAAAATCGGTGTTGAACC 1049
||.||||||||||||||.||.||..|.|||||.|||||||..|.||||||
RBAM_025270__ 1000 CATTCCAGTCAGCTTACACCTAAAAATGAGCAGAAAATCGCCGATGAACC 1049
BSNT_04099___ 1050 ACAGGTTGGCATTGTAAATGGGCTTGCAGTCTATGGGCCTAACAGCGGAT 1099
.||.||.|||||.||.||.||.|||||.|||||.|||||.||||||||
RBAM_025270__ 1050 GCAAGTCGGCATCGTGAACGGACTTGCCGTCTACGGGCCGAACAGCGG-- 1097
BSNT_04099___ 1100 CGC--TTCTGGAAATCGAAGTGAGTGTAACCGCGGCTCAAGATAAAGGA- 1146
||| |.||||||||||||||||.|||.||..|.||.||.||.||||||
RBAM_025270__ 1098 CGCATTGCTGGAAATCGAAGTGAATGTCACACCTGCGCAGGACAAAGGAA 1147
BSNT_04099___ 1147 ---TCAATTAACATCACAGGAATAGCTGAAGAAGAAAGCATCGGCAGCCA 1193
|.||| |||||.|||||.||.||.||||||||||||||||||||
RBAM_025270__ 1148 GCCTGAAT----ATCACGGGAATTGCAGAGGAAGAAAGCATCGGCAGCCA 1193
BSNT_04099___ 1194 ATCAAAATCAATCAGACGAAAAAGCATGGCGAAGGGTTCGGTTGAAAATG 1243
|||.||.||.|||.|.||.|||||.|||||||||||.||.||.|||||||
RBAM_025270__ 1194 ATCGAAGTCGATCCGCCGCAAAAGTATGGCGAAGGGATCTGTAGAAAATG 1243
BSNT_04099___ 1244 TATTAACCGTGCTCCGGACAATGGGAATGAAGCCTTCTGATTATGATATT 1293
|..|.||.||.||.||.||||||||.||.||.|||||.||.|||||.|||
RBAM_025270__ 1244 TTCTGACGGTTCTGCGCACAATGGGCATCAAACCTTCAGACTATGACATT 1293
BSNT_04099___ 1294 CACATCAATTTCCCAGGAGGGATTCCGATTGATGGGCCGTCAGCAGGCAT 1343
|||.|||||||.||.||.||....||||||||.||.||.||||||||.||
RBAM_025270__ 1294 CACGTCAATTTTCCGGGCGGAGGCCCGATTGACGGACCTTCAGCAGGTAT 1343
BSNT_04099___ 1344 TGCGATGGCGGCGGGGATTTTCTCGGCGATACACAAAATTCCTATTGACA 1393
.||||||||.|||||||||||.||.|||||.|||...||.||.||.|||.
RBAM_025270__ 1344 CGCGATGGCCGCGGGGATTTTTTCCGCGATTCACCGCATCCCGATCGACC 1393
BSNT_04099___ 1394 ATACCGTTGCGATGACGGGCGAAATCAGCCTGAATGGTCTTGTGAAACCC 1443
||||.||.|||||||||||.|||||||||||||..||.|||||.|||||.
RBAM_025270__ 1394 ATACGGTGGCGATGACGGGAGAAATCAGCCTGACGGGGCTTGTCAAACCG 1443
BSNT_04099___ 1444 ATTGGAGGCGTCATTCCGAAAATAAAAGCGGCCAAGCAGTCCGGGGCGAA 1493
||.||.|||||||||||||||||.|||||.||.||.|||.||||.||.||
RBAM_025270__ 1444 ATCGGCGGCGTCATTCCGAAAATTAAAGCCGCAAAACAGGCCGGAGCAAA 1493
BSNT_04099___ 1494 AAAGGTGATTATCCCATATGAAAATCAGCAGGCCA-TCTTAAAGCAGATT 1542
||.|||.||||||||||||||||||||||||.||| |||.||| |..||.
RBAM_025270__ 1494 AACGGTCATTATCCCATATGAAAATCAGCAGTCCATTCTGAAA-CGAATA 1542
BSNT_04099___ 1543 GACGGGATCGAGATTATTGCAGTGAAGACGTTCCAAGAAGTGCTTGATGA 1592
|||||.|||...||||..||.||.||.||||||||.|||||||||||.|.
RBAM_025270__ 1543 GACGGAATCACCATTAAAGCGGTAAAAACGTTCCAGGAAGTGCTTGACGT 1592
BSNT_04099___ 1593 AATTTTGGTGAATCCGCCAACGGAACAAAAACCGTTTCATATCGAAATCA 1642
.||.|||||..||||.||..|.|||||||||||||||.|||||.||||.|
RBAM_025270__ 1593 CATATTGGTTGATCCTCCTTCAGAACAAAAACCGTTTGATATCCAAATGA 1642
BSNT_04099___ 1643 ATAAAGAATCTGTTTAA 1659
||||||||||.||.|||
RBAM_025270__ 1643 ATAAAGAATCCGTATAA 1659
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