Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04089 and RBAM_025200

See DNA alignment / Visit BSNT_04089 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence pep-align/BSNT_04089___hemD.1.9828.seq
#    -bsequence pep-align/RBAM_025200___hemD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04089___hemD-RBAM_025200___hemD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04089___hemD-RBAM_025200___hemD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04089___hemD
# 2: RBAM_025200___hemD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     162/262 (61.8%)
# Similarity:   200/262 (76.3%)
# Gaps:           3/262 ( 1.1%)
# Score: 846.0
# 
#
#=======================================

BSNT_04089___      1 MENDFPLKGKTVLVTRNKAQATSFQQKVEALGGKAVLTSLITFRRALPND     50
                     |.||.||:||||||||||.||..|::|||||||.||..|||.|:.|||::
RBAM_025200__      1 MANDLPLQGKTVLVTRNKRQAAPFRKKVEALGGTAVSASLIAFQEALPDE     50

BSNT_04089___     51 VAEQVREDLAAPGWLVFTSVNGADFFFSYLKENQLILPAHKKIAAVGEKT    100
                     .|:.:||||:.|||||||||||..||||||..:.|.|...||||||||||
RBAM_025200__     51 CADSLREDLSEPGWLVFTSVNGVRFFFSYLDRHGLALSGRKKIAAVGEKT    100

BSNT_04089___    101 ARRLQTHNVSVDVMPQEYIAEQLADALKQHAEPGEPITVMKGNLSRDVIK    150
                     ||.|:......|.||.||:||.|||.||::|...|||:|:||||||||||
RBAM_025200__    101 ARALKERGARTDAMPDEYVAECLADTLKRYASAAEPISVIKGNLSRDVIK    150

BSNT_04089___    151 QELVPLGFEVKEWVLYETIPDEEGIEALKDAAGQYSFDYVTFTSSSTVHT    200
                     .||.|||::::|||||.||.||:|::.|:.||.:..||::||||||.|||
RBAM_025200__    151 AELEPLGYQIREWVLYNTIQDEKGMDELRRAASRSHFDFITFTSSSAVHT    200

BSNT_04089___    201 FMHVLGEELKKWKANGTACISIGPLTNDALLTYGITSHTPDTFTIDGMLG    250
                     |||.:|:..|.|:.:|.:.|||||||..|||.|||:||.|||:||:|||.
RBAM_025200__    201 FMHAVGDGEKAWENSGASYISIGPLTEKALLEYGISSHVPDTYTIEGMLD    250

BSNT_04089___    251 LMCSMSREEERI    262
                     :|||||.::   
RBAM_025200__    251 VMCSMSGKD---    259


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