Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04089 and RBAM_025200

See Amino acid alignment / Visit BSNT_04089 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04089___hemD.1.9828.seq
#    -bsequence dna-align/RBAM_025200___hemD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04089___hemD-RBAM_025200___hemD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04089___hemD-RBAM_025200___hemD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04089___hemD
# 2: RBAM_025200___hemD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity:     553/845 (65.4%)
# Similarity:   553/845 (65.4%)
# Gaps:         121/845 (14.3%)
# Score: 1688.0
# 
#
#=======================================

BSNT_04089___      1 ATGGAAAATGATTTTCCGTTGAAAGGAAAAACAGTACTTGTCACCCGGAA     50
                     ||||.||||||..||||.||..|||||||.||.||.||.|||||||||||
RBAM_025200__      1 ATGGCAAATGACCTTCCTTTACAAGGAAAGACCGTGCTCGTCACCCGGAA     50

BSNT_04089___     51 TAAGGCACAGGCAACATCATTTCAGCAAAAAGTGGAGGCGCTTGGCGGTA    100
                     .||...||||||..||.|.||.|...||||||||||||||||.|||||.|
RBAM_025200__     51 CAAAAGACAGGCCGCACCGTTCCGAAAAAAAGTGGAGGCGCTCGGCGGAA    100

BSNT_04089___    101 AAGCGGTTTTAACCTCTT---TGATTACGTTTC--GCCGCGCTTTGCCGA    145
                     ..||.||||   ||.|||   ||||..|.||||  |..||||  |.|||.
RBAM_025200__    101 CGGCTGTTT---CCGCTTCGCTGATCGCTTTTCAGGAAGCGC--TCCCGG    145

BSNT_04089___    146 ATG-ATGTTGCGGAACAG-GTAAGAGAGGACCTTGCCGCGCCAGGCTGGC    193
                     ||| ||| ||||| |||| .|..|.||.||||||.|.|.|||.||.||||
RBAM_025200__    146 ATGAATG-TGCGG-ACAGTCTCCGGGAAGACCTTTCTGAGCCGGGATGGC    193

BSNT_04089___    194 TTGTTTTTACAAGTGTGAACGGGG--CAGACTTCTTTTTTTCTTATC-TG    240
                     ||||.||||||||.||.|||||.|  |.|  |||||||||||.|||| ||
RBAM_025200__    194 TTGTGTTTACAAGCGTAAACGGTGTCCGG--TTCTTTTTTTCCTATCTTG    241

BSNT_04089___    241 AAGGAAAATCA--GCTTATTCTCCCTGCGCAT---------AAAAAAATT    279
                     |..|    |||  |     |||   |||||.|         ||||||||.
RBAM_025200__    242 ATCG----TCACGG-----TCT---TGCGCTTTCGGGACGGAAAAAAATC    279

BSNT_04089___    280 GCAGCAGTCGGTGAAAAAAC--CGCCCGCCGTTTACAAACG------CAT    321
                     |||||.|||||||||||.||  |||.||||.|..|..|.||      |..
RBAM_025200__    280 GCAGCCGTCGGTGAAAAGACTGCGCGCGCCCTGAAAGAGCGGGGAGCCCG    329

BSNT_04089___    322 AACGTATCGGTTGATGTGATGCCACAGGAGTATATTGCTGAACAATTGGC    371
                     .|||        ||||.||||||..|.||||||.|.||.|||....||||
RBAM_025200__    330 GACG--------GATGCGATGCCTGACGAGTATGTGGCGGAATGTCTGGC    371

BSNT_04089___    372 TGACGCTCTTAA--------GCAGCATGCTGAACCGGGGGAGCCCATTAC    413
                     |||..|| ||||        |||.|| ||||  ||    ||.||||||.|
RBAM_025200__    372 TGATACT-TTAAAACGGTACGCATCA-GCTG--CC----GAACCCATTTC    413

BSNT_04089___    414 CGTAATGAAAGGG-AATTTGTCACGTGATGTGATAAAACAAGAGCTTGTC    462
                     .||.|| |||||| |||||.|||||.|||||.||||||...|||||||..
RBAM_025200__    414 AGTGAT-AAAGGGCAATTTATCACGCGATGTCATAAAAGCGGAGCTTGAG    462

BSNT_04089___    463 CCGCTCGGTTTTGAAGTTAAGGAATGGGTTCTCTACGAAACGATTCCAGA    512
                     |||||.||.|.|.||.|.|.|||||||||..|.|||.|.||.||||..||
RBAM_025200__    463 CCGCTTGGCTATCAAATAAGGGAATGGGTGTTATACAATACCATTCAGGA    512

BSNT_04089___    513 TGAAGAAGGCATCGAGGCACTGAAAGAC--GCTGCGGGTCAATATTCC--    558
                     ||||.|||||||.||.|..|||  ||||  |||||        ||.||  
RBAM_025200__    513 TGAAAAAGGCATGGACGAGCTG--AGACGGGCTGC--------ATCCCGC    552

BSNT_04089___    559 ------TTTGACTATGTAACATTTACGAGTTCATCAACCGTACATACGTT    602
                           |||||.|.|.|.||.|||||.||.|||||..|.||.||||||||
RBAM_025200__    553 TCTCATTTTGATTTTATTACGTTTACCAGCTCATCGGCGGTCCATACGTT    602

BSNT_04089___    603 TATGCATGTCTTGGGAGAAGAATTAAAAAAGTGGAAGGCGAA--------    644
                     ||||||.|...|.|||||.|.|..||||..||||     |||        
RBAM_025200__    603 TATGCACGCGGTCGGAGACGGAGAAAAAGCGTGG-----GAAAACAGCGG    647

BSNT_04089___    645 TGGGACGGCTTGTATCAGCATTGGGCCTTTAACAAATGATGCCCTTCTGA    694
                     ||.||  || |.|||||||||.||.|||||.|||.|..|.||.||..||.
RBAM_025200__    648 TGCGA--GC-TATATCAGCATCGGCCCTTTGACAGAGAAAGCGCTCTTGG    694

BSNT_04089___    695 CGTACGGCATCACATCGCATACGCCTGATACATTTACAATAGATGGCATG    744
                     ..|||||.|||.||||.|||..||||||.||.|.|||.||.||.||||||
RBAM_025200__    695 AATACGGGATCTCATCCCATGTGCCTGACACTTATACGATTGAAGGCATG    744

BSNT_04089___    745 CTTGGGTTAATGTGCAGCATGTCAAGAGAGGAAGAGAGAATATGA    789
                     ||.|...|.||||||||||||||..||.||||         .|||
RBAM_025200__    745 CTGGACGTCATGTGCAGCATGTCGGGAAAGGA---------TTGA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04089 and RBAM_025200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
