Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04062 and RBAM_025030

See DNA alignment / Visit BSNT_04062 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence pep-align/BSNT_04062___spoIVFA.1.9828.seq
#    -bsequence pep-align/RBAM_025030___spoIVFA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04062___spoIVFA-RBAM_025030___spoIVFA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04062___spoIVFA-RBAM_025030___spoIVFA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04062___spoIVFA
# 2: RBAM_025030___spoIVFA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 268
# Identity:     179/268 (66.8%)
# Similarity:   219/268 (81.7%)
# Gaps:           5/268 ( 1.9%)
# Score: 935.0
# 
#
#=======================================

BSNT_04062___      1 MSHRADEIRKRLEKRRKQLSGSKRFSTQTVSEKQKPPSWVMVTDQEKHGT     50
                     ||||||||||||.|||||...|||...|. ::.|..|:|..|.:||||..
RBAM_025030__      1 MSHRADEIRKRLAKRRKQRPESKRTFVQN-AQTQNFPAWQTVKEQEKHKL     49

BSNT_04062___     51 IPVYE---DNMPTFNGKHPLVKTDSIILKCLLSACLVLVSAIAYKTNIGP     97
                     :|.||   ::.|.|||:|||:...||||||||:|||||:|||||||:..|
RBAM_025030__     50 LPDYEYQTEHPPEFNGRHPLISAHSIILKCLLAACLVLISAIAYKTDKQP     99

BSNT_04062___     98 VSQIKPAVAKTFETEFQFASASHWFETKFGNPLAFLAPEHKNKEQQIEVG    147
                     :||||||:|:||:.|||||:.|:||.:.||||||||.|..|.|:.|:.|.
RBAM_025030__    100 LSQIKPAIAQTFQKEFQFAAVSNWFVSSFGNPLAFLTPGTKKKDGQVAVS    149

BSNT_04062___    148 KDLIAPASGKVQQDFQDNGEGIKVETSSDKIDSVKEGYVVEVSKDSQTGL    197
                     :|:..||:||:|||||:||||:.|||:|:.||||||||::|||||.:|||
RBAM_025030__    150 QDMAVPAAGKIQQDFQNNGEGVVVETASEAIDSVKEGYIMEVSKDKKTGL    199

BSNT_04062___    198 TVKVQHADNTYSIYGELKDVDVALYDFVDKGKKLGSIKLDDHNKGVYYFA    247
                     ||||||||||.||||.||||:|:||||||||||:|||||:|.:||.||||
RBAM_025030__    200 TVKVQHADNTSSIYGRLKDVNVSLYDFVDKGKKIGSIKLNDKSKGQYYFA    249

BSNT_04062___    248 MKDGDKFIDPIQVITFE-    264
                     ::||||||||||||||: 
RBAM_025030__    250 IQDGDKFIDPIQVITFDE    267


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