Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04062 and RBAM_025030

See Amino acid alignment / Visit BSNT_04062 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04062___spoIVFA.1.9828.seq
#    -bsequence dna-align/RBAM_025030___spoIVFA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04062___spoIVFA-RBAM_025030___spoIVFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04062___spoIVFA-RBAM_025030___spoIVFA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04062___spoIVFA
# 2: RBAM_025030___spoIVFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 846
# Identity:     579/846 (68.4%)
# Similarity:   579/846 (68.4%)
# Gaps:          93/846 (11.0%)
# Score: 1905.5
# 
#
#=======================================

BSNT_04062___      1 ATGAGTCACAGAGCAGATGAAATCAGAAAACGATTAGAGAAAAGAAGAAA     50
                     ||||||||||||||.||||||||.||||||.||.|.|..|||||||||||
RBAM_025030__      1 ATGAGTCACAGAGCTGATGAAATTAGAAAAAGACTGGCCAAAAGAAGAAA     50

BSNT_04062___     51 GCAGCTTTCCGGC-----TCAAAACGTTTCTCTACTCAGACAGTTTC--T     93
                     .|||     ||||     ||||||||            |||  ||||  |
RBAM_025030__     51 ACAG-----CGGCCTGAATCAAAACG------------GAC--TTTCGTT     81

BSNT_04062___     94 GAAAA---------GCAGAA---ACCCCCGTCCTGGGTGATGGTAACGGA    131
                     .||||         ||||||   .|||.||   |||..||.|||.|.|||
RBAM_025030__     82 CAAAACGCCCAAACGCAGAATTTTCCCGCG---TGGCAGACGGTCAAGGA    128

BSNT_04062___    132 TCAGGAAAAACATGGAACAA-----TTCCGGTTTATGAAGAT-------A    169
                     .||||||||     |.||||     ||||||..||.|||.||       |
RBAM_025030__    129 GCAGGAAAA-----GCACAAACTTCTTCCGGACTACGAATATCAAACGGA    173

BSNT_04062___    170 ACA--TGCCAACATTCAACGGAAAACACCCATTGGTGAAAACAG-----A    212
                     |||  .|||...|||.||||||...||.||||||     |.|||     |
RBAM_025030__    174 ACACCCGCCCGAATTTAACGGACGGCATCCATTG-----ATCAGCGCTCA    218

BSNT_04062___    213 TTCAATTATCCTGAAATGTCTTCTGTCGGCCTGCCTTGTTCTCGTTTCAG    262
                     |||.|||||..|.|||||.||.|||.|.|||||.||.||.||..|.||.|
RBAM_025030__    219 TTCTATTATTTTAAAATGCCTGCTGGCCGCCTGTCTCGTACTGATCTCCG    268

BSNT_04062___    263 CTATAGCCTATAAA----ACAAACATTGGACCCG-TCAGTCAGATTAAAC    307
                     ||||.|||||||||    ||||||     |.||| |.||||||||.||||
RBAM_025030__    269 CTATTGCCTATAAAACTGACAAAC-----AGCCGCTGAGTCAGATCAAAC    313

BSNT_04062___    308 CCGCCGTAGCCAAAACCTTTGAAACTGAATTTCAATTTGCCTCAGCAAGC    357
                     |.||..|.||..||||||||.|||..||||||||.|||||..|.|.||||
RBAM_025030__    314 CGGCGATCGCACAAACCTTTCAAAAAGAATTTCAGTTTGCTGCCGTAAGC    363

BSNT_04062___    358 CATTGGTTCGAAACCAAATTCGGAAATCCGCTTGCTTTCCTGGCTCC-TG    406
                     .|||||||||.|.|....||||||||.|||||.|||||.||..|.|| .|
RBAM_025030__    364 AATTGGTTCGTATCTTCCTTCGGAAACCCGCTCGCTTTTCTTACGCCGGG    413

BSNT_04062___    407 AACACAAAAATAAGGAACAG-CAAATTGAAGT-AGGCAAAGATCTGATCG    454
                     ||| .|||||.|||| ||.| ||..|.|..|| ||.| |.|||.||..||
RBAM_025030__    414 AAC-GAAAAAGAAGG-ACGGTCAGGTGGCGGTCAGTC-AGGATATGGCCG    460

BSNT_04062___    455 CGCCTGCATCCGGGAAAGTACAGCAGGATTTTCAGGACAATGGGGAAGGA    504
                     ..|||||..|.||||||.|.||||||||.|||||..|.||.||.|||||.
RBAM_025030__    461 TTCCTGCCGCGGGGAAAATCCAGCAGGACTTTCAAAATAACGGAGAAGGC    510

BSNT_04062___    505 ATTAAAGTCGAAACAAGCAGTGATAAG--ATTGATAGCGTAAAAGAAGGC    552
                     .|....||||||||...|||.|  |||  |||||.|||||||||||||||
RBAM_025030__    511 GTCGTCGTCGAAACCGCCAGCG--AAGCCATTGACAGCGTAAAAGAAGGC    558

BSNT_04062___    553 TATGTGGTTGAAGTCAGCAAAGACAGCCAAACGGGACTGACGGTTAAGGT    602
                     ||..|..|.|||||.||||||||.|...||||.||.||||||||.|||||
RBAM_025030__    559 TACATTATGGAAGTGAGCAAAGATAAAAAAACAGGGCTGACGGTGAAGGT    608

BSNT_04062___    603 GCAGCATGCTGACAACACCTATAGTATCTATGGCGAGCTCAAAGATGTGG    652
                     ||||||.||.|||||.|||...||.||.||.|||..|||.||||||||..
RBAM_025030__    609 GCAGCACGCCGACAATACCAGCAGCATTTACGGCCGGCTAAAAGATGTTA    658

BSNT_04062___    653 ATGTTGCTTTATATGATTTTGTGGATAAAGGCAAAAAGCTCGGTTCGATT    702
                     |.|||.|.||.||.||.|||||.||||||||.||||||.||||||||||.
RBAM_025030__    659 ACGTTTCATTGTACGACTTTGTCGATAAAGGGAAAAAGATCGGTTCGATC    708

BSNT_04062___    703 AAGCTTGATGATCATAATAAAGGGGTCTATTATTTTGCCATGAAAGACGG    752
                     |||||..|.|||.|.|.||||||....||.|||||.||.||..|.||.||
RBAM_025030__    709 AAGCTCAACGATAAAAGTAAAGGCCAGTACTATTTCGCGATCCAGGATGG    758

BSNT_04062___    753 CGATAAATTTATTGATCCGATTCAGGTGATTACATT---TGAATAA    795
                     |||||||||.||.||||||||.||||||||.|||||   |||||||
RBAM_025030__    759 CGATAAATTCATAGATCCGATCCAGGTGATCACATTTGATGAATAA    804


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04062 and RBAM_025030

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
