Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04008 and RBAM_024740

See DNA alignment / Visit BSNT_04008 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence pep-align/BSNT_04008___yrvD.1.9828.seq
#    -bsequence pep-align/RBAM_024740___yrvD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04008___yrvD-RBAM_024740___yrvD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04008___yrvD-RBAM_024740___yrvD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04008___yrvD
# 2: RBAM_024740___yrvD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 114
# Identity:      80/114 (70.2%)
# Similarity:    89/114 (78.1%)
# Gaps:          13/114 (11.4%)
# Score: 372.0
# 
#
#=======================================

BSNT_04008___      1 MNKQWTIIFALIFTLIVAIFAVINVRSVEVDYLFGRSEWPLILVILGSVL     50
                     |||||||||||:||||||||||||||:||||||||.:|||||||||||||
RBAM_024740__      1 MNKQWTIIFALLFTLIVAIFAVINVRAVEVDYLFGTAEWPLILVILGSVL     50

BSNT_04008___     51 MGALIVFSVGIFQVMKLKREIKTLRKENRTAIHKQEDTHLADQTDTQDAS    100
                     ||||||||.|||||||||||||.||||||:|      ..|...:|.:..:
RBAM_024740__     51 MGALIVFSAGIFQVMKLKREIKILRKENRSA------AELTADSDGKKTA     94

BSNT_04008___    101 A----MIEKKD---    107
                     |    |:|:|.   
RBAM_024740__     95 APPEEMLEEKKGSE    108


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