Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04008 and RBAM_024740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:21
# Commandline: needle
# -asequence dna-align/BSNT_04008___yrvD.1.9828.seq
# -bsequence dna-align/RBAM_024740___yrvD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04008___yrvD-RBAM_024740___yrvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04008___yrvD-RBAM_024740___yrvD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04008___yrvD
# 2: RBAM_024740___yrvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 357
# Identity: 240/357 (67.2%)
# Similarity: 240/357 (67.2%)
# Gaps: 63/357 (17.6%)
# Score: 841.0
#
#
#=======================================
BSNT_04008___ 1 ATGAATAAACAATGGACCATTATTTTCGC---ACTTATTTTCACCTTAAT 47
|||||||||||||||||.|||||.||||| || ||||| ||.||.||
RBAM_024740__ 1 ATGAATAAACAATGGACTATTATATTCGCTTTAC-TATTT--ACTTTGAT 47
BSNT_04008___ 48 TGTCGCTATTTTCGCAGTCATTAATGTTCGATCCGTAGAAGTTGATTACC 97
||||||.||.||.||.||||||||.||.||..|.||.||.||||||||.|
RBAM_024740__ 48 TGTCGCCATCTTTGCTGTCATTAACGTGCGGGCGGTTGAGGTTGATTATC 97
BSNT_04008___ 98 TGTTTGGAAGATCAGAATGGCCGCTCATTCTTGTTATTTTGGGCTCAGTT 147
||||.||||...|.|||||||||||.|||.|.||.|||||.|||||.||.
RBAM_024740__ 98 TGTTCGGAACCGCTGAATGGCCGCTGATTTTAGTCATTTTAGGCTCTGTG 147
BSNT_04008___ 148 TTAATGGGAGCGCTGATCGTATTTTCTGTCGGCATTTTTCAGGTAATGAA 197
||||||||||||||||||||.|||||.|.|||.||.|||||.||.|||||
RBAM_024740__ 148 TTAATGGGAGCGCTGATCGTGTTTTCAGCCGGTATCTTTCAAGTGATGAA 197
BSNT_04008___ 198 ATTGAAGCGGGAAATAAAAACCTTGCGGAAAGAAAATAGAACAGC----- 242
..|||||||.|||||.||||.|.|||||||||||||.|||.|.||
RBAM_024740__ 198 GCTGAAGCGCGAAATTAAAATCCTGCGGAAAGAAAACAGATCTGCGGCTG 247
BSNT_04008___ 243 AATACATAAACAAGAGGATACTCATCTTGCTGA-TCAGACTGACACACAG 291
||| .||.| ||||| ||.||| |.||.|.|
RBAM_024740__ 248 AAT---------TGACG-----------GCTGATTCGGAC-GGCAAAAA- 275
BSNT_04008___ 292 GATGCATCAGCC---------------ATGATT---GAGAAAAAA-GACT 322
|.||||| |||.|| ||||||||| ||..
RBAM_024740__ 276 -----AACAGCCGCGCCGCCGGAAGAAATGCTTGAAGAGAAAAAAGGATC 320
BSNT_04008___ 323 AG----- 324
||
RBAM_024740__ 321 AGAATAA 327
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