Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03988 and RBAM_024580

See DNA alignment / Visit BSNT_03988 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence pep-align/BSNT_03988.1.9828.seq
#    -bsequence pep-align/RBAM_024580___yrrD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03988-RBAM_024580___yrrD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03988-RBAM_024580___yrrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: RBAM_024580___yrrD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 175
# Identity:      93/175 (53.1%)
# Similarity:   113/175 (64.6%)
# Gaps:          24/175 (13.7%)
# Score: 462.5
# 
#
#=======================================

BSNT_03988         1 --------------------MRTCHEVEGFPVYSERTSCYLGAISDICFS     30
                                         :||||..||..||.|.|...||.|||:|||
RBAM_024580__      1 MLPGFLAKPIRVQQKVVDHTLRTCHAAEGRTVYDENTGRSLGMISDVCFS     50

BSNT_03988        31 LKGDCLGFILAQKRFLHHHHTLLRACDISSILDDRILASVSSEQLLPLPK     80
                     |.|..|||:|.|||..|:.|..|.|.||..:  |:...:.....|.||||
RBAM_024580__     51 LDGRFLGFVLEQKRLFHNRHLFLEASDIKEM--DQEAVAAGHAHLQPLPK     98

BSNT_03988        81 SCFTYEQMKMKLVKSQEGDILGMLEDVYFCLDRGIIVAYELSDGFFSDLA    130
                     ||||:||:||:.|||.:|::.|:|||||||||||||||||||||||||||
RBAM_024580__     99 SCFTFEQIKMQPVKSPDGEMFGLLEDVYFCLDRGIIVAYELSDGFFSDLA    148

BSNT_03988       131 GSKRQIQR-ADSLVEVRKDEIVLNG    154
                     | :||::| ||:|:|..|:.|||||
RBAM_024580__    149 G-RRQVRRAADTLIEAGKEGIVLNG    172


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