Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03988 and RBAM_024580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_03988.1.9828.seq
# -bsequence dna-align/RBAM_024580___yrrD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03988-RBAM_024580___yrrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03988-RBAM_024580___yrrD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: RBAM_024580___yrrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 569
# Identity: 330/569 (58.0%)
# Similarity: 330/569 (58.0%)
# Gaps: 154/569 (27.1%)
# Score: 1044.5
#
#
#=======================================
BSNT_03988 0 -------------------------------------------------- 0
RBAM_024580__ 1 ATGCTGCCCGGCTTCTTGGCAAAACCTATACGTGTTCAACAAAAGGTGGT 50
BSNT_03988 1 ----------TTGAGAACATGCCATGAAGTAGAAGGATTCCCAGTATACT 40
||||||||||||||||.||..||||||....||||||| |
RBAM_024580__ 51 TGATCACACTTTGAGAACATGCCATGCAGCTGAAGGACGAACAGTATA-T 99
BSNT_03988 41 CA-GAACGAACTTCTTGTTA----------TCTCGGGGCAATTTCCGATA 79
.| ||| ||| | |||||||...||.||.|||.
RBAM_024580__ 100 GACGAA--AAC--------ACCGGGCGCAGTCTCGGGATGATATCGGATG 139
BSNT_03988 80 TTTGTTTTTCTC-TGAAAGGAGATTGTCTTGGGTTTATTCTTGCACAAAA 128
|.|||||.|||| |||..|..|.|| |||.||.||..|.||.|..||.||
RBAM_024580__ 140 TATGTTTCTCTCTTGACGGCCGGTT-TCTCGGTTTCGTGCTGGAGCAGAA 188
BSNT_03988 129 ACGCTTTTTGCATCATCATCATACGC-------TATTACGGGCGTGTGAT 171
||||.|.||.|| ||..||| |.|||..|||..|||||
RBAM_024580__ 189 ACGCCTGTTTCA-------CAACCGCCATCTTTTTTTAGAGGCAAGTGAT 231
BSNT_03988 172 AT-----------CTCTTCCATTCTTGATGA--CCGCATATTGGCT-TCG 207
|| .|| |.|| ||| |.||| .||
RBAM_024580__ 232 ATAAAAGAGATGGATC-----------AAGAAGCCG-----TAGCTGCCG 265
BSNT_03988 208 GTCA-GTTCAGAACAGCTTTT---GCCTCTTCCGAA-ATCATGCTTCACA 252
|||| |.||| ||| ||||.|.||||| |.| ||.|||||.
RBAM_024580__ 266 GTCATGCTCA--------TTTGCAGCCTTTGCCGAAGAGC-TGTTTCACC 306
BSNT_03988 253 TACGAGCAGATGAAGATGAAGCTTGTGAAATCGCAAGAGGGCGATATATT 302
|..||.|||||.||||||.|||..||||||||||..||.||.||.||.||
RBAM_024580__ 307 TTTGAACAGATTAAGATGCAGCCGGTGAAATCGCCTGATGGTGAAATGTT 356
BSNT_03988 303 GGGGATGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAG 352
.||..|||||||||||||||||||||||||||||||||||||||||||||
RBAM_024580__ 357 CGGTTTGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAG 406
BSNT_03988 353 CATATGAACTCTCGGACGGTTTCTTTTCTGACCTGGCGGGAAG----CAA 398
|||||||||||||||||||.||||||||.||.|||||.||.|| |||
RBAM_024580__ 407 CATATGAACTCTCGGACGGCTTCTTTTCAGATCTGGCTGGCAGACGCCAA 456
BSNT_03988 399 --GCGCCAGATCCAAAGAGCGGATTCGCTTGTCGAGGTGCGGAAAGACGA 446
||||| |..|| ||.|||.|||||.|.||.|.|.|||||||.|.
RBAM_024580__ 457 GTGCGCC-GCGCC-----GCCGATACGCTTATTGAAGCGGGGAAAGAAGG 500
BSNT_03988 447 GATCGTTCTGAACGGATAG 465
.|||||.|||||||||||.
RBAM_024580__ 501 CATCGTCCTGAACGGATAA 519
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