Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03979 and RBAM_024520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence pep-align/BSNT_03979.1.9828.seq
# -bsequence pep-align/RBAM_024520___yrrI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03979-RBAM_024520___yrrI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03979-RBAM_024520___yrrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03979
# 2: RBAM_024520___yrrI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity: 225/353 (63.7%)
# Similarity: 251/353 (71.1%)
# Gaps: 74/353 (21.0%)
# Score: 1205.0
#
#
#=======================================
BSNT_03979 0 -------------------------------------------------- 0
RBAM_024520__ 1 MLQKPLQLLMWTAVCLLVLLTVYVFCMLDMLWSPIWLVIKSLFIPIFIAV 50
BSNT_03979 1 ------------------------MVIYVLFFGGIGWALYKGVPVLIVQL 26
::||.||||||||.:||||||||.||
RBAM_024520__ 51 FIAYLLLPITEWLHRKGMPRTLSLLLIYCLFFGGIGWGVYKGVPVLIEQL 100
BSNT_03979 27 TDLSENIPMFAETYNGLLLHVHNHTDDWPDGMHHRIDKMIRQTETFFAGT 76
.||||:||..|:.||.:|.|:|||||.||||||||:||||:|||||.|||
RBAM_024520__ 101 QDLSESIPGLAKNYNSMLKHLHNHTDHWPDGMHHRMDKMIQQTETFLAGT 150
BSNT_03979 77 IEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKR 126
||..|..||.||||.|||||||||||||||||::||||||||||||||||
RBAM_024520__ 151 IESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKR 200
BSNT_03979 127 GSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISG 176
||.||||||||||||||||||||.:||:|||:|||:|||||||||||..|
RBAM_024520__ 201 GSEFLRDVDDSLGDYIRGQLLVCFLLGLIAGVSFWLFGLPYPLILGLAIG 250
BSNT_03979 177 VTNVIPYFGPFIGAVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPF 226
:||||||||||||||||||:|:.||.|||::|::|:|||||:|||||||.
RBAM_024520__ 251 ITNVIPYFGPFIGAVPALLLALAISAKAVIIVIVTIFILQFIEGNILSPL 300
BSNT_03979 227 IVGRSLKMHPVVIMLALLAGGELAGIVGMILAVPATAVLKVMMIHFLRMR 276
||||||:|||||||||||||||||||.||||||||.|||||..|||||:|
RBAM_024520__ 301 IVGRSLRMHPVVIMLALLAGGELAGIPGMILAVPAAAVLKVTAIHFLRIR 350
BSNT_03979 277 TEH 279
|||
RBAM_024520__ 351 TEH 353
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