Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03979 and RBAM_024520

See DNA alignment / Visit BSNT_03979 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence pep-align/BSNT_03979.1.9828.seq
#    -bsequence pep-align/RBAM_024520___yrrI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03979-RBAM_024520___yrrI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03979-RBAM_024520___yrrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03979
# 2: RBAM_024520___yrrI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity:     225/353 (63.7%)
# Similarity:   251/353 (71.1%)
# Gaps:          74/353 (21.0%)
# Score: 1205.0
# 
#
#=======================================

BSNT_03979         0 --------------------------------------------------      0
                                                                       
RBAM_024520__      1 MLQKPLQLLMWTAVCLLVLLTVYVFCMLDMLWSPIWLVIKSLFIPIFIAV     50

BSNT_03979         1 ------------------------MVIYVLFFGGIGWALYKGVPVLIVQL     26
                                             ::||.||||||||.:||||||||.||
RBAM_024520__     51 FIAYLLLPITEWLHRKGMPRTLSLLLIYCLFFGGIGWGVYKGVPVLIEQL    100

BSNT_03979        27 TDLSENIPMFAETYNGLLLHVHNHTDDWPDGMHHRIDKMIRQTETFFAGT     76
                     .||||:||..|:.||.:|.|:|||||.||||||||:||||:|||||.|||
RBAM_024520__    101 QDLSESIPGLAKNYNSMLKHLHNHTDHWPDGMHHRMDKMIQQTETFLAGT    150

BSNT_03979        77 IEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKR    126
                     ||..|..||.||||.|||||||||||||||||::||||||||||||||||
RBAM_024520__    151 IESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKR    200

BSNT_03979       127 GSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISG    176
                     ||.||||||||||||||||||||.:||:|||:|||:|||||||||||..|
RBAM_024520__    201 GSEFLRDVDDSLGDYIRGQLLVCFLLGLIAGVSFWLFGLPYPLILGLAIG    250

BSNT_03979       177 VTNVIPYFGPFIGAVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPF    226
                     :||||||||||||||||||:|:.||.|||::|::|:|||||:|||||||.
RBAM_024520__    251 ITNVIPYFGPFIGAVPALLLALAISAKAVIIVIVTIFILQFIEGNILSPL    300

BSNT_03979       227 IVGRSLKMHPVVIMLALLAGGELAGIVGMILAVPATAVLKVMMIHFLRMR    276
                     ||||||:|||||||||||||||||||.||||||||.|||||..|||||:|
RBAM_024520__    301 IVGRSLRMHPVVIMLALLAGGELAGIPGMILAVPAAAVLKVTAIHFLRIR    350

BSNT_03979       277 TEH    279
                     |||
RBAM_024520__    351 TEH    353


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