Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03979 and RBAM_024520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_03979.1.9828.seq
# -bsequence dna-align/RBAM_024520___yrrI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03979-RBAM_024520___yrrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03979-RBAM_024520___yrrI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03979
# 2: RBAM_024520___yrrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity: 634/1065 (59.5%)
# Similarity: 634/1065 (59.5%)
# Gaps: 228/1065 (21.4%)
# Score: 2308.0
#
#
#=======================================
BSNT_03979 0 -------------------------------------------------- 0
RBAM_024520__ 1 ATGCTTCAAAAACCGCTGCAGCTCTTAATGTGGACGGCTGTATGTCTGCT 50
BSNT_03979 0 -------------------------------------------------- 0
RBAM_024520__ 51 CGTTTTGTTAACAGTGTATGTCTTTTGCATGCTCGATATGTTATGGTCTC 100
BSNT_03979 0 -------------------------------------------------- 0
RBAM_024520__ 101 CCATTTGGCTTGTTATAAAATCTCTCTTTATTCCTATATTCATCGCAGTA 150
BSNT_03979 0 -------------------------------------------------- 0
RBAM_024520__ 151 TTTATTGCTTATCTTTTACTTCCGATTACTGAATGGCTTCATAGAAAAGG 200
BSNT_03979 1 -----------------------TTGGTCATTTATGTTCTTTTTTTTGGC 27
|| .|.||||||...||.|||||.|||
RBAM_024520__ 201 GATGCCTAGAACTTTAAGCCTGCTT-CTGATTTATTGCCTGTTTTTCGGC 249
BSNT_03979 28 GGGATTGGCTGGGCGTTGTATAAAGGGGTGCCTGTTTTAATCGTGCAGCT 77
||.||.|||||||.|.|.|||||||||||.|||||||||||.|..|||||
RBAM_024520__ 250 GGAATCGGCTGGGGGGTTTATAAAGGGGTTCCTGTTTTAATTGAACAGCT 299
BSNT_03979 78 GACGGATTTGTCAGAAAATATACCCATGT-TTGCCGAAACGTATAACGGG 126
|..||||.||||.||.|..||.||| .|| |||||.|||..||.|||.|.
RBAM_024520__ 300 GCAGGATCTGTCTGAGAGCATTCCC-GGTCTTGCCAAAAACTACAACAGC 348
BSNT_03979 127 CTTCTTCTTCATGTGCATAACCATACGGATGACTGGCCTGATGGTATGCA 176
.|.||....|||.|||||||.||.||||||.|.||||||||.||.|||||
RBAM_024520__ 349 ATGCTGAAGCATCTGCATAATCACACGGATCATTGGCCTGACGGCATGCA 398
BSNT_03979 177 TCACCGTATAGATAAAATGATCCGCCAGACGGAGACGTTTTTTGCGGGAA 226
.||.||.||.||.||||||||.|..|||||.||.||||||.||||.||.|
RBAM_024520__ 399 CCATCGAATGGACAAAATGATTCAGCAGACAGAAACGTTTCTTGCCGGCA 448
BSNT_03979 227 CGATCGAGGGTGCGATCAGCGGGATCCGCAATGTGCTTGATTACTTCTTA 276
||||.||..|..|||||||..|.|||||....|||||||||||..||.|.
RBAM_024520__ 449 CGATTGAAAGCACGATCAGAAGCATCCGTTTCGTGCTTGATTATATCCTG 498
BSNT_03979 277 ATTGCTGCAACAATCCCTTTTCTCGTGTTTTATATGGTGAAGGACATTGA 326
||.||.||.||.||.||||||||||||||.||||||||||||||.||.||
RBAM_024520__ 499 ATCGCGGCGACGATTCCTTTTCTCGTGTTCTATATGGTGAAGGATATAGA 548
BSNT_03979 327 ATTAATGAAAAAGACAGTATGGTACTTGACTCCGAAGTCGTGGAGAAAGC 376
..|.||||||||||||||.|||||.|||||.||||||||.||||||||..
RBAM_024520__ 549 CGTCATGAAAAAGACAGTCTGGTATTTGACGCCGAAGTCCTGGAGAAAAA 598
BSNT_03979 377 GGGGCAGCGCCTTTTTGCGGGATGTGGATGATTCGCTTGGCGATTATATC 426
||||.||.|..|||.|||||||||||||.||.||.||.||.|||||.|||
RBAM_024520__ 599 GGGGGAGTGAATTTCTGCGGGATGTGGACGACTCTCTCGGTGATTACATC 648
BSNT_03979 427 CGCGGCCAGCTTTTGGTCTGCTTGATTCTTGGCGTGATTGCAGGCATTTC 476
|||||.||||||.|.||.||.||..|.||.||..|.||.||.|||.||||
RBAM_024520__ 649 CGCGGTCAGCTTCTCGTTTGTTTTTTGCTCGGGCTAATAGCCGGCGTTTC 698
BSNT_03979 477 GTTCTGGGTATTTGGGCTTCCGTATCCACTGATACTTGGCCTTATC-TCT 525
.||.|||.|.||.||||||||.|||||.|||||..|.||.|||..| ||.
RBAM_024520__ 699 ATTTTGGCTGTTCGGGCTTCCTTATCCGCTGATTTTGGGTCTTGCCATCG 748
BSNT_03979 526 GGAGTAACGAATGTCATCCCGTATTTTGGCCCTTTCATCGGAGCTGTTCC 575
||| |.||||||||||||||||||||.||.||.||.|||||.|||||.||
RBAM_024520__ 749 GGA-TTACGAATGTCATCCCGTATTTCGGTCCGTTTATCGGCGCTGTACC 797
BSNT_03979 576 TGCGTTGTTAATTGCGATGACGATCTCAGTGAAGGCGGTTCTTGTTGTGG 625
.|||.||.|..|||||.||.||||.||.|..||.||.||..|..|.||..
RBAM_024520__ 798 GGCGCTGCTCCTTGCGCTGGCGATTTCTGCTAAAGCTGTGATCATCGTAA 847
BSNT_03979 626 TGATTACGGTGTTTATTCTGCAGTTTATGGAAGGAAATATCCTCAGTCCG 675
|..|.|||.|.|||||||||||.|||||.||||||||.||..|.||.|||
RBAM_024520__ 848 TCGTCACGATTTTTATTCTGCAATTTATAGAAGGAAACATTTTGAGCCCG 897
BSNT_03979 676 TTCATTGTCGGCAGAAGCCTTAAAATGCATCCGGTCGTTATCATGCTTGC 725
.|.||||||||..|.||.||.|.||||||.||.|||||.||||||||.||
RBAM_024520__ 898 CTTATTGTCGGGCGCAGTCTCAGAATGCACCCCGTCGTGATCATGCTGGC 947
BSNT_03979 726 ACTCCTTGCCGGAGGGGAGCTTGCGGGAATCGTCGGGATGATTCTGGCTG 775
.||||||||||||||.|||||.|||||.||...|||.||||||||.||||
RBAM_024520__ 948 GCTCCTTGCCGGAGGAGAGCTCGCGGGCATTCCCGGCATGATTCTCGCTG 997
BSNT_03979 776 TTCCTGCGACGGCTGTTTTAAAAGTAATGATGATCCATTTTTTGCGGATG 825
||||.|||.|.||.|||||||||||.|.|...||.||.|||||||||||.
RBAM_024520__ 998 TTCCGGCGGCAGCCGTTTTAAAAGTGACGGCCATACACTTTTTGCGGATC 1047
BSNT_03979 826 AGGACGGAGCATTGA 840
||||||||.||||||
RBAM_024520__ 1048 AGGACGGAACATTGA 1062
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