Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03964 and RBAM_024410

See DNA alignment / Visit BSNT_03964 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence pep-align/BSNT_03964___yrrR.1.9828.seq
#    -bsequence pep-align/RBAM_024410___yrrR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03964___yrrR-RBAM_024410___yrrR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03964___yrrR-RBAM_024410___yrrR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03964___yrrR
# 2: RBAM_024410___yrrR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 584
# Identity:     464/584 (79.5%)
# Similarity:   525/584 (89.9%)
# Gaps:           0/584 ( 0.0%)
# Score: 2450.0
# 
#
#=======================================

BSNT_03964___      1 MKISKRMKLAVIAFLIVFFLLLLRLAEIQLFFTESFSKKKINLIQESVKQ     50
                     |.:|||:|.|||.||:|||.||.|||||||||||||||..||||||||||
RBAM_024410__      1 MIVSKRLKAAVICFLLVFFFLLARLAEIQLFFTESFSKSNINLIQESVKQ     50

BSNT_03964___     51 RTEEVLISDGRGSFLDRNGRALTGQSEPAVVLFPFLLTQDWPIKKVADIL    100
                     |||||||||||||||||||:.|||:.:|||:|||||:|||||:.:|:|||
RBAM_024410__     51 RTEEVLISDGRGSFLDRNGKELTGKKQPAVILFPFLVTQDWPVDRVSDIL    100

BSNT_03964___    101 GMSEDNLRQTLGQAKKPVILQQKKIKTLSKQSITKINSLKYPGIYGVYME    150
                     ||.:..|||.|.:|||||:|..:|||.|:|||::.||||||||||||||:
RBAM_024410__    101 GMKQGELRQLLTEAKKPVVLNSRKIKHLTKQSVSNINSLKYPGIYGVYMK    150

BSNT_03964___    151 NEDKPSLASHTIGSTNQDPALLRKKYPDKGSLPITTEIGTTGLERTFDEF    200
                     :..:.::|:|.:|:|||||.||:||||.:..||||.:|||:|:|||||||
RBAM_024410__    151 DSKETNIAAHLLGATNQDPELLKKKYPGRKELPITAKIGTSGMERTFDEF    200

BSNT_03964___    201 LLPEQDTKLLYHVDGKGNPLFGMDVKYTAEANTFYPLQVKTTIDQSIQKA    250
                     ||.:|||||||||||:||||||||||||||||.||||||||:||::||||
RBAM_024410__    201 LLADQDTKLLYHVDGRGNPLFGMDVKYTAEANAFYPLQVKTSIDRNIQKA    250

BSNT_03964___    251 MEEVLDEQGLKKGGAVLLDIENSSVLGIVSKPDADVSRQNTLQNYMLTPI    300
                     ||:||.::|||||||||||||.|||||:|||||||:|:|.||||||||||
RBAM_024410__    251 MEDVLKDRGLKKGGAVLLDIEKSSVLGMVSKPDADMSKQQTLQNYMLTPI    300

BSNT_03964___    301 YPGSVFKTVIAAAAIENNMVKPSQTFNCNFNLYGEPGDDKGTLSFDESFA    350
                     ||||||||||||||||.|.|||..:||||.|||||||||||||||.||||
RBAM_024410__    301 YPGSVFKTVIAAAAIEQNEVKPGTSFNCNLNLYGEPGDDKGTLSFGESFA    350

BSNT_03964___    351 QSCNYTFTSLAEQLMKKDSSVIEDMSEKLALTDRAGWEGKLYHETDFRQL    400
                     ||||||||||||:|:|||.||||:|:|||.||.|||||||||.|..||||
RBAM_024410__    351 QSCNYTFTSLAEKLIKKDDSVIENMAEKLGLTQRAGWEGKLYREDGFRQL    400

BSNT_03964___    401 YNEKSGVIWGDEKDKSVKKAIAQTAIGQKNVKVTPLEVANMMATIARGGE    450
                     |||||||||||:|||:||||:||||||||||||||||||||||.||||||
RBAM_024410__    401 YNEKSGVIWGDDKDKTVKKAVAQTAIGQKNVKVTPLEVANMMAAIARGGE    450

BSNT_03964___    451 KRQVKIAEQIEYKNGTTLVTFKDQKLKGETIDKYTSQQLQKILRRVVESP    500
                     |:|||||::|||||.||:.:||||.||||.|||||:||||||||.||.||
RBAM_024410__    451 KKQVKIADKIEYKNKTTMASFKDQPLKGENIDKYTAQQLQKILREVVTSP    500

BSNT_03964___    501 SGTGRRFQDLPYTVAGKSGTAQTGKLSKEKETLYEKWFAGYFPADKPKYA    550
                     .|||||||||||.:||||||||||..:|:|:|||.|||||||||||||||
RBAM_024410__    501 KGTGRRFQDLPYEIAGKSGTAQTGMFTKDKQTLYHKWFAGYFPADKPKYA    550

BSNT_03964___    551 LVVLHMDTPGDKALTNSVFYDIVKKVHEIEINQK    584
                     ||||||||||||||||:|||||||||||.||||.
RBAM_024410__    551 LVVLHMDTPGDKALTNTVFYDIVKKVHENEINQT    584


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