Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03964 and RBAM_024410
See
Amino acid alignment /
Visit
BSNT_03964 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_03964___yrrR.1.9828.seq
# -bsequence dna-align/RBAM_024410___yrrR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03964___yrrR-RBAM_024410___yrrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03964___yrrR-RBAM_024410___yrrR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03964___yrrR
# 2: RBAM_024410___yrrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1818
# Identity: 1349/1818 (74.2%)
# Similarity: 1349/1818 (74.2%)
# Gaps: 126/1818 ( 6.9%)
# Score: 4949.0
#
#
#=======================================
BSNT_03964___ 1 ATGAAGATATCGAAACGAATG-AAGCTGGCAGTCATCGCTTTTTTGATTG 49
||||...||||.|||.|..|| |||| |||.||.||...||||.||.|.|
RBAM_024410__ 1 ATGATCGTATCAAAAAGGCTGAAAGC-GGCCGTGATTTGTTTTCTGCTCG 49
BSNT_03964___ 50 TATTTTTTCTGCTTCTGCT---GAGGCTTGCGGAAATCCAGCTGTTTTTC 96
| .||||||| ||||||| ||||||.||.|||||.||||||||||||
RBAM_024410__ 50 T-GTTTTTCT--TTCTGCTTGCGAGGCTGGCTGAAATTCAGCTGTTTTTC 96
BSNT_03964___ 97 ACAGAATCATTTTCTAAAAAGAAAATTAATTTGATTCAAGAAAGTGTGAA 146
||||||||.|||||.|||...||.||||||.|||||||.|||||.||.||
RBAM_024410__ 97 ACAGAATCTTTTTCAAAATCCAATATTAATCTGATTCAGGAAAGCGTCAA 146
BSNT_03964___ 147 ACAGCGGACGGAGGAAGTGCTCATTTCAGATGGAAGAGGCTCTTTTTTAG 196
.|||||||||||.|||||.||.||||||||.|||.|.|||||||||.|.|
RBAM_024410__ 147 GCAGCGGACGGAAGAAGTCCTTATTTCAGACGGACGCGGCTCTTTTCTTG 196
BSNT_03964___ 197 ATCGAAACGGGCGGGCGCTGACAGG-ACAAAGCGAGCCCGCGGTTGTTTT 245
||||.|||||....|..|||||.|| |.||||| ||||.||.||..|..|
RBAM_024410__ 197 ATCGGAACGGCAAAGAACTGACCGGAAAAAAGC-AGCCTGCCGTCATACT 245
BSNT_03964___ 246 GTTCCCTTTTCTGCTGACGCAGGATTGGCCGATCAAAAAAGTTG------ 289
|||.||.|||||..||||||||||||||||| ||||
RBAM_024410__ 246 GTTTCCCTTTCTCGTGACGCAGGATTGGCCG---------GTTGACCGGG 286
BSNT_03964___ 290 ---CGGACATCCTCGGCATGTCTGAAGATAATTTGCGCCAGACA---CTA 333
|.|||||.|||||.||| |.||| ..|
RBAM_024410__ 287 TATCTGACATTCTCGGAATG-------------------AAACAGGGGGA 317
BSNT_03964___ 334 GGTCAGGCA----------------AAAAAACCGGTCATTTTG--CAGCA 365
|.||||||| |||||||||||..|..|| ||||
RBAM_024410__ 318 GCTCAGGCAGCTGCTCACGGAAGCGAAAAAACCGGTGGTCCTGAACAGC- 366
BSNT_03964___ 366 AAAGAAAATCAAAACACTTT--CAAAACAATCTATCACAAAAATCAATTC 413
||||||..|||||| ||| |.||||||||..|..||||.||||||||
RBAM_024410__ 367 --AGAAAAATAAAACA-TTTGACGAAACAATCCGTGTCAAATATCAATTC 413
BSNT_03964___ 414 TTTGAAATATCCCGGCATTTACGGCGTATATATGGA------GAATGAAG 457
||||||||||||||||||||||||||||||||||.| .||.|||
RBAM_024410__ 414 TTTGAAATATCCCGGCATTTACGGCGTATATATGAAAGACAGCAAGGAA- 462
BSNT_03964___ 458 ACAAGCCCAGCCTTGCTTCACATACGATAGGGAGC-ACGAACCAAGATCC 506
||||.|..|||| ||| ||| |..|.|||.|| ||.|||||.||.||
RBAM_024410__ 463 ACAAACATAGCC--GCT---CAT-CTGTTGGGCGCGACAAACCAGGACCC 506
BSNT_03964___ 507 GGCGCTGCTTCG--CAAGAAATATCCTGACAAGGGAAG--TCTTCCGATT 552
.|.||| ||.| .||||||||.||.|.|| ||||| .||.|||||.
RBAM_024410__ 507 TGAGCT--TTTGAAAAAGAAATACCCCGGCA--GGAAGGAACTGCCGATC 552
BSNT_03964___ 553 ACAACAGAAATCGGAACAACCGGCTTAGAACGGACATTTGACGAGTTTTT 602
||..||.|.|||||.||||.|||..|.||.|||||.|||||.||||||||
RBAM_024410__ 553 ACGGCAAAGATCGGGACAAGCGGGATGGAGCGGACGTTTGATGAGTTTTT 602
BSNT_03964___ 603 GCTTCCGGAACAAGACACAAAGCTTTTATATCATGTGGACGGAAAAGGAA 652
.||..||||.||.||||||||.|||||.||||||||.|||||||..||||
RBAM_024410__ 603 ACTGGCGGATCAGGACACAAAACTTTTGTATCATGTCGACGGAAGGGGAA 652
BSNT_03964___ 653 ACCCTTTGTTTGGCATGGACGTCAAATATACAGCTGAAGCCAATACATTT 702
|||||||.||.||.|||||||||||||||||.||||||||.||..|.|||
RBAM_024410__ 653 ACCCTTTATTCGGAATGGACGTCAAATATACGGCTGAAGCAAACGCGTTT 702
BSNT_03964___ 703 TATCCGCTCCAGGTCAAAACAACGATCGATCAAAGCATTCAAAAAGCGAT 752
||||||||.||.||||||||..|.|||||.|..|..|||||||||||.||
RBAM_024410__ 703 TATCCGCTGCAAGTCAAAACCTCCATCGACCGCAATATTCAAAAAGCAAT 752
BSNT_03964___ 753 GGAGGAGGTATTGGATGAACAGGGGCTGAAAAAGGGAGGAGCTGTGCTGC 802
|||.||.||||||.|.||.|..|||.|.||||||||.|||||.||.||..
RBAM_024410__ 753 GGAAGATGTATTGAAAGACCGCGGGTTAAAAAAGGGGGGAGCCGTCCTTT 802
BSNT_03964___ 803 TGGACATCGAAAATAGCAGTGTTCTGGGAATTGTAAGCAAA-CCAGATGC 851
|.|||||.|||||.||||||||.||.|||||.|| |.|||| ||.||.||
RBAM_024410__ 803 TAGACATTGAAAAAAGCAGTGTGCTCGGAATGGT-ATCAAAGCCTGACGC 851
BSNT_03964___ 852 AGACGTGTCCCGGCAAAACACACTTCAAAATTATATGCTGACGCCAATCT 901
.|||.||||...|||..|.|||||.||||||||.|||||||||||.||.|
RBAM_024410__ 852 CGACATGTCAAAGCAGCAGACACTGCAAAATTACATGCTGACGCCGATTT 901
BSNT_03964___ 902 ATCCCGGATCAGTTTTTAAAACAGTCATTGCCGCAGCTGCAATCGAAAAT 951
||||.||||||||.||||||||.||.||.||||||||.|||||.|||.|.
RBAM_024410__ 902 ATCCGGGATCAGTGTTTAAAACGGTGATCGCCGCAGCCGCAATAGAACAA 951
BSNT_03964___ 952 AATATGGTGAAGCCTAGTCA-AACCTTTAATTGCAATTTTAACCTGTACG 1000
||....|||||||| .|.|| |.|||||||.||||||.|.||||||||||
RBAM_024410__ 952 AACGAAGTGAAGCC-GGGCACATCCTTTAACTGCAATCTCAACCTGTACG 1000
BSNT_03964___ 1001 GGGAACCGGGGGACGACAAAGGAACCTTGTCTTTTGATGAAAGTTTTGCC 1050
|.||.||||||||.||||||||.||..|...|||||..|||||.||||||
RBAM_024410__ 1001 GAGAGCCGGGGGATGACAAAGGCACGCTCAGTTTTGGAGAAAGCTTTGCC 1050
BSNT_03964___ 1051 CAAAGCTGTAATTACACATTTACGAGTCTTGCAGAACAATTAATGAAAAA 1100
||||||||.|||||.||.|||||.||||||||.|||.||||.||.|||||
RBAM_024410__ 1051 CAAAGCTGCAATTATACGTTTACAAGTCTTGCGGAAAAATTGATCAAAAA 1100
BSNT_03964___ 1101 AGACAGCTCAGTTATTGAAGATATGTCCGAGAAGCTGGCTCTCACTGATC 1150
|||....||.|||||||||.|.|||.|.||.||.||.|.||||||..|.|
RBAM_024410__ 1101 AGATGATTCCGTTATTGAAAACATGGCGGAAAAACTCGGTCTCACACAGC 1150
BSNT_03964___ 1151 GGGCAGGCTGGGAGGGAAAACTGTACCACGAA-ACCGATTTCCGCCAGCT 1199
||||.||||||||.||.||.|||||||..||| ||.|| |||.|.|||||
RBAM_024410__ 1151 GGGCGGGCTGGGAAGGCAAGCTGTACCGGGAAGACGGA-TTCAGGCAGCT 1199
BSNT_03964___ 1200 GTATAACGAAAAAAGCGGCGTGATTTGGGGGGATGAAAAAGACAAATCAG 1249
||||||.|||||||||||.||.||||||||.|||||.|||||||||.|.|
RBAM_024410__ 1200 GTATAATGAAAAAAGCGGGGTCATTTGGGGAGATGACAAAGACAAAACCG 1249
BSNT_03964___ 1250 TCAAAAAAGCCATTGCGCAAACAGCAATCGGGCAGAAAAATGTAAAGGTA 1299
|.|||||||||.|.||.||.||.||.||||||||.|||||.||.||.||.
RBAM_024410__ 1250 TAAAAAAAGCCGTCGCACAGACGGCGATCGGGCAAAAAAACGTGAAAGTC 1299
BSNT_03964___ 1300 ACGCCGCTAGAGGTAGCCAATATGATGGCGACAATCGCCCGCGGCGGAGA 1349
|||||.||.||.||.|||||||||||||||.|.|||||.||||||||.||
RBAM_024410__ 1300 ACGCCTCTTGAAGTCGCCAATATGATGGCGGCGATCGCGCGCGGCGGTGA 1349
BSNT_03964___ 1350 AAAACGGCAGGTGAAAATTGCCGAACAAATTGAGTATAAGAACGGCACAA 1399
||||...||.||.|||||.||.||..|||||||.||.||.|||...||.|
RBAM_024410__ 1350 AAAAAAACAAGTCAAAATCGCGGACAAAATTGAATACAAAAACAAAACGA 1399
BSNT_03964___ 1400 CGCT--CGTTACATTTAAGGATCAGAAGCTCAAAGGGGAAACGATAGACA 1447
||.| ||| ||||.||.||||||..|.|.||||||||||..||.||||
RBAM_024410__ 1400 CGATGGCGT--CATTCAAAGATCAGCCGTTAAAAGGGGAAAACATCGACA 1447
BSNT_03964___ 1448 AATATACGTCACAGCAGCTTCAAAAAATACTGCGGCGGGTGGTAGAA--- 1494
||||||||.|.|||||||||||||||||.||..| ||||
RBAM_024410__ 1448 AATATACGGCGCAGCAGCTTCAAAAAATTCTCAG---------AGAAGTC 1488
BSNT_03964___ 1495 -TCTCCTTC------TGGAACGGGCAGAAGGTTTCAAGATCTTCCGTATA 1537
||.|| || .|||||.|||.||||||||||.|||||.||||||.
RBAM_024410__ 1489 GTCACC-TCACCGAAAGGAACCGGCCGAAGGTTTCAGGATCTGCCGTATG 1537
BSNT_03964___ 1538 CTGTAGCAGGGAAATCGGGCACAGCCCAAACAGGCAAGCTTTCAAAAGAG 1587
...|||||||.||||||||.||.|||||.||.||.|.|.|..|||||||.
RBAM_024410__ 1538 AGATAGCAGGCAAATCGGGAACGGCCCAGACGGGAATGTTCACAAAAGAT 1587
BSNT_03964___ 1588 AAGGAAACGCTCTATGAAAAATGGTTTGCCGGATATTTTCCCGCGGATAA 1637
||..|.|||||.||..|.|||||||||||.|||||.|||||||||||.||
RBAM_024410__ 1588 AAACAGACGCTTTACCACAAATGGTTTGCGGGATACTTTCCCGCGGACAA 1637
BSNT_03964___ 1638 GCCGAAATACGCTCTGGTTGTTTTACACATGGATACACCGGGAGATAAGG 1687
|||||||||||||||.||.||..|.||||||||.||.|||||.|||||||
RBAM_024410__ 1638 GCCGAAATACGCTCTCGTGGTGCTGCACATGGACACGCCGGGGGATAAGG 1687
BSNT_03964___ 1688 CTCTGACAAATTCGGTGTTTTATGATATTGTTAAAAAAGTACACGAAATT 1737
|||||||||||.|.|||||||||||||||||||||||.|||||.||||.|
RBAM_024410__ 1688 CTCTGACAAATACAGTGTTTTATGATATTGTTAAAAAGGTACATGAAAAT 1737
BSNT_03964___ 1738 GAAATCAATCAGAAATAG 1755
|||||.|||||||.||||
RBAM_024410__ 1738 GAAATAAATCAGACATAG 1755
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.