Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03963 and RBAM_024400

See DNA alignment / Visit BSNT_03963 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence pep-align/BSNT_03963___yrrS.1.9828.seq
#    -bsequence pep-align/RBAM_024400___yrrS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03963___yrrS-RBAM_024400___yrrS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03963___yrrS-RBAM_024400___yrrS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: RBAM_024400___yrrS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity:     185/242 (76.4%)
# Similarity:   206/242 (85.1%)
# Gaps:          13/242 ( 5.4%)
# Score: 909.0
# 
#
#=======================================

BSNT_03963___      1 MSNNQSRYENRDKRRKANLVLNILIAIVSILIVVVAANLFINSPSSKDVS     50
                     |||.|||:||||||||||:|||||||||||||||||.:|||||||| |||
RBAM_024400__      1 MSNKQSRFENRDKRRKANMVLNILIAIVSILIVVVAVSLFINSPSS-DVS     49

BSNT_03963___     51 KDSETAQKQESPASGKTEKKSDEDIKDSKKDTS--DSEKD------SEKS     92
                     :.::|:||||:||||||::.||||||||||||:  |.:||      |:.|
RBAM_024400__     50 EKADTSQKQETPASGKTKQTSDEDIKDSKKDTASDDDKKDKQDKDTSDSS     99

BSNT_03963___     93 SDSDSKKDDSSSKKDDSDSDSSSDS-ASDGLKDAKVTEGGSSSDVEKTYE    141
                     |||||||||.|||.|||   |..|| :||..|.||:||||||||||||..
RBAM_024400__    100 SDSDSKKDDDSSKSDDS---SKKDSVSSDPFKGAKITEGGSSSDVEKTIV    146

BSNT_03963___    142 NPDWKAVGTEQTGEHAATYDSSSQDWAEMLKAISYATGVSTDNMTVLWLG    191
                     ||.||||||:|||||||||||||:||:|||.|||||||||.|:|||||||
RBAM_024400__    147 NPKWKAVGTKQTGEHAATYDSSSEDWSEMLDAISYATGVSKDHMTVLWLG    196

BSNT_03963___    192 NNGSPQDAKGKILDKATGNKYQVTITWVDEKGWKPTKVEKLK    233
                     |||||||||||:|||..|.||||||||.|:|||||||||.||
RBAM_024400__    197 NNGSPQDAKGKVLDKTNGKKYQVTITWKDKKGWKPTKVETLK    238


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