Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03963 and RBAM_024400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_03963___yrrS.1.9828.seq
# -bsequence dna-align/RBAM_024400___yrrS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03963___yrrS-RBAM_024400___yrrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03963___yrrS-RBAM_024400___yrrS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: RBAM_024400___yrrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 740
# Identity: 538/740 (72.7%)
# Similarity: 538/740 (72.7%)
# Gaps: 61/740 ( 8.2%)
# Score: 1962.5
#
#
#=======================================
BSNT_03963___ 1 TTGAGCAATAATCAATCTCGTTATGAAAATCGTGATAAACGCAGAAAAGC 50
|||||||||||.||||||||||.||||||.||||||||.|||||||||||
RBAM_024400__ 1 TTGAGCAATAAACAATCTCGTTTTGAAAACCGTGATAAGCGCAGAAAAGC 50
BSNT_03963___ 51 CAATTTAGTGCTTAACATTTTAATCGCAATCGTATCCATACTAATTGTCG 100
.|||.|.|||||||||||||||||.||.||||||||.||.||.|||||||
RBAM_024400__ 51 AAATATGGTGCTTAACATTTTAATTGCTATCGTATCTATTCTTATTGTCG 100
BSNT_03963___ 101 TAGTAG----CAGCGAATCTCTTCATTAACAGTCCTTCTAGCAAAGATGT 146
|.||.| |||| ||||||||.||||||||.||.||| ||.||
RBAM_024400__ 101 TCGTTGCCGTCAGC----CTCTTCATCAACAGTCCGTCGAGC---GACGT 143
BSNT_03963___ 147 CAGC----AAGGATTCTGAAACG-GCGCAAAAACAGGAATCTCCGGCTTC 191
.||| ||| |.||.||| || |||||.||||||.|.||.||.||
RBAM_024400__ 144 GAGCGAAAAAG----CGGACACGAGC-CAAAAGCAGGAAACACCTGCATC 188
BSNT_03963___ 192 AGGAAAGACGGAAAAGAAATCGGATGAGGATATAAAAGACAGCAAGAAAG 241
|||.||||||.|..|||.|||.|||||.||.||||||||||||||.||||
RBAM_024400__ 189 AGGCAAGACGAAGCAGACATCCGATGAAGACATAAAAGACAGCAAAAAAG 238
BSNT_03963___ 242 ATA---CATCTGAC-----------AGCGAAA-AGGAT---------TCT 267
||| ||||.||| ||..||| ||||| |||
RBAM_024400__ 239 ATACGGCATCAGACGATGACAAAAAAGATAAACAGGATAAGGACACATCT 288
BSNT_03963___ 268 GAGAAGTCTTCTGACTCTGATTCCAAAAAAGATGATTCTTCTTCTAAAAA 317
||....|||||.||||||||...|||||||||.|||..|||.||.||||.
RBAM_024400__ 289 GATTCATCTTCAGACTCTGACAGCAAAAAAGACGATGATTCATCGAAAAG 338
BSNT_03963___ 318 GGATGATTCTGATTCAGATTCAA-----GCTCAGATTCAGCCAGTGATGG 362
.||||| |||...||| .|||.|.|||| ||.|||..
RBAM_024400__ 339 TGATGA--------CAGCAGCAAAAAAGACTCTGTTTCA---AGCGATCC 377
BSNT_03963___ 363 GCTTAAAGATGCAAAAGTAACAGAAGGCGGCTCATCGAGCGATGTGGAAA 412
..||||||..||||||.|||||||.|||||||||||.||||||||.||.|
RBAM_024400__ 378 TTTTAAAGGCGCAAAAATAACAGAGGGCGGCTCATCAAGCGATGTCGAGA 427
BSNT_03963___ 413 AAACGTATGAAAATCCTGACTGGAAAGCAGTCGGAACTGAGCAAACAGGC 462
||||...||..||.||..|.||||||||.|||||.||..||||.||.||.
RBAM_024400__ 428 AAACAATTGTTAACCCAAAATGGAAAGCGGTCGGCACAAAGCAGACGGGA 477
BSNT_03963___ 463 GAGCATGCCGCTACTTATGATTCAAGCTCGCAAGACTGGGCTGAGATGCT 512
||.|||||.||.||.|||||.||||||||..||||||||.|.||.|||||
RBAM_024400__ 478 GAACATGCGGCGACGTATGACTCAAGCTCTGAAGACTGGTCCGAAATGCT 527
BSNT_03963___ 513 GAAAGCCATTTCATACGCAACTGGTGTCTCAACAGATAACATGACGGTGC 562
..|.|||||.||.||||||||.||.||.||||.||||.|.|||||.||||
RBAM_024400__ 528 TGACGCCATCTCTTACGCAACAGGCGTGTCAAAAGATCATATGACAGTGC 577
BSNT_03963___ 563 TCTGGCTTGGAAATAACGGCAGCCCTCAGGATGCCAAAGGCAAGATTTTG 612
|.|||||.|||||.||.||.|||||.||.|||||.||.||.||..||||.
RBAM_024400__ 578 TGTGGCTCGGAAACAATGGAAGCCCGCAAGATGCGAAGGGTAAAGTTTTA 627
BSNT_03963___ 613 GACAAGGCGACTGGGAATAAATATCAAGTCACGATTACATGGGTCGATGA 662
|||||..|||..||.||.||.|||||.|||||.||.||.|||...||..|
RBAM_024400__ 628 GACAAAACGAACGGCAAAAAGTATCAGGTCACCATCACTTGGAAAGACAA 677
BSNT_03963___ 663 AAAAGGCTGGAAGCCGACAAAAGTAGAAAAGCTAAAATAA 702
|||||||||||||||||||||||||||||...||||||||
RBAM_024400__ 678 AAAAGGCTGGAAGCCGACAAAAGTAGAAACCTTAAAATAA 717
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