Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03940 and RBAM_024280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence pep-align/BSNT_03940___yrhH.1.9828.seq
# -bsequence pep-align/RBAM_024280___yrhH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03940___yrhH-RBAM_024280___yrhH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03940___yrhH-RBAM_024280___yrhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03940___yrhH
# 2: RBAM_024280___yrhH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 184
# Identity: 89/184 (48.4%)
# Similarity: 115/184 (62.5%)
# Gaps: 9/184 ( 4.9%)
# Score: 395.0
#
#
#=======================================
BSNT_03940___ 1 MLENRLYKRSDFWKLFSRKYKLTKTIEHMMIDSI--DIQENDRILEIGIG 48
.|...|...|....||.........:|..| ||||.|||||||.|
RBAM_024280__ 1 ----MLQHTSSALKRMRAKYFAASEPAESVIQQILMDIQEYDRILEIGTG 46
BSNT_03940___ 49 NGTVFKSITKKLKKGSLKSIDPSKRKVRQISRANRK--NMGNGEVFHGYP 96
||::||.|..:|:|||||||:.||||:|:..||||. ..|.|.:..|.|
RBAM_024280__ 47 NGSMFKQIIGQLEKGSLKSIETSKRKIRKTQRANRSVIKAGLGNIQQGRP 96
BSNT_03940___ 97 EDIPFDDRTFNKVFSLHTVQSCTNIRLALREIYRVLQIDGRFYISIDTNT 146
|.|||.||:|:|||||||.::.::.|.|.:|:||||||||.||:.:..:.
RBAM_024280__ 97 ESIPFCDRSFHKVFSLHTAETVSDYRTACKEVYRVLQIDGCFYMVLKPSR 146
BSNT_03940___ 147 GEKKKTYIQLLKDQHFRDLSVIRRDSCLCIMAVK 180
..:|..|::|.||||||:||:.|||...|.|:|
RBAM_024280__ 147 -MSEKDVIEVLYDQHFRDISVVSRDSFHFITAIK 179
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