Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03940 and RBAM_024280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_03940___yrhH.1.9828.seq
# -bsequence dna-align/RBAM_024280___yrhH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03940___yrhH-RBAM_024280___yrhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03940___yrhH-RBAM_024280___yrhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03940___yrhH
# 2: RBAM_024280___yrhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 355/616 (57.6%)
# Similarity: 355/616 (57.6%)
# Gaps: 149/616 (24.2%)
# Score: 910.5
#
#
#=======================================
BSNT_03940___ 1 ATGCTAGAAAATAGACTCT-----AT--AAACGATCGGATTTTTG----- 38
|||.|..||.|.|.| ||| || |||||| .||
RBAM_024280__ 1 ATGTTGCAACACACA-TCTTCAGCATTAAAACGA--------ATGCGCGC 41
BSNT_03940___ 39 GAAATTATTTTCT-CGGAAATATAAGCTAACCAAAACA-------ATTGA 80
|||||..|||.|| | ||.|| ||||...|.| |||.|
RBAM_024280__ 42 GAAATACTTTGCTGC------ATCAG--AACCGGCAGAGTCAGTCATTCA 83
BSNT_03940___ 81 GCATATGATGATTGACTCTATAGATATACAAGAAAATGACAGAATTTTAG 130
|||.||..||||.||| |||||.|||.|.|||.|.|||||.|
RBAM_024280__ 84 GCAAATCTTGATGGAC---------ATACAGGAATACGACCGCATTTTGG 124
BSNT_03940___ 131 AAATTGGAATTGGAAACGGCACTGTCTTTAAAAGCATAACCA--AGA-AA 177
||||.||.|..|||||||||.|..|.|||||| || ||.|| .|| |.
RBAM_024280__ 125 AAATCGGGACCGGAAACGGCTCAATGTTTAAA--CA-AATCATCGGACAG 171
BSNT_03940___ 178 CTAAAAAAGGGAAGCCTAAAAAGCATTGATCCTTCAAAACGAAAGGTAAG 227
||..|||||||.||.||.||||||||.||..|.||.|||||.|| ||.
RBAM_024280__ 172 CTTGAAAAGGGCAGTCTTAAAAGCATAGAAACATCGAAACGTAA---AAT 218
BSNT_03940___ 228 ACAGATATCA---CGTGCGAATCG----------AAAG-----------A 253
||.||.|.|| ||.||.||.|| |||| |
RBAM_024280__ 219 ACGGAAAACACAGCGCGCAAACCGTTCGGTTATAAAAGCCGGGCTCGGAA 268
BSNT_03940___ 254 ACAT------GGGGA-ACGGGGAGGTTTTTCATGGCTATCCAGAGGACAT 296
|||| ||||| ||.||.|.| |||
RBAM_024280__ 269 ACATTCAGCAGGGGAGACCGGAAAG----------------------CAT 296
BSNT_03940___ 297 TCCCTT-TGATGACCGTACCTTTAATAAAGTCTTTTCTTTACATACGGTT 345
.||.|| || .|||||.|..|||.||||||||||.||.||||||||
RBAM_024280__ 297 ACCGTTCTG-CGACCGCAGTTTTCATAAAGTCTTCTCGTTACATAC---- 341
BSNT_03940___ 346 CAAAGCTGCACCAAT-----ATTA--GGCTTGCAT-TAAGAGAAATTTAC 387
.||||.|.||.| |||| ||...|||| ||| ||||.|.|||
RBAM_024280__ 342 ---TGCTGAAACAGTCAGCGATTACCGGACGGCATGTAA-AGAAGTGTAC 387
BSNT_03940___ 388 AGGGTGCTTCAAATTGACGGCCGGTTTTATATCAGTATTGACACAAATAC 437
.|.||.||||||||||||||..|.||.||||| .||.||||.|| .|.|
RBAM_024280__ 388 CGCGTTCTTCAAATTGACGGGTGTTTCTATAT-GGTTTTGAAAC--CTTC 434
BSNT_03940___ 438 -CG-----GTGAAAAAAAGAAAACGTAT---ATTCAACTGCTGAAAGACC 478
|| ||||||| |.|| |||.|..||||..|.||.|
RBAM_024280__ 435 GCGGATGAGTGAAAA---------GGATGTGATTGAGGTGCTCTATGATC 475
BSNT_03940___ 479 AGCATTTCAGGGATCTTTCTGTTATCAGGCGTGATTCCTGTCTA-TGTAT 527
||||||||||.||..||||.|||.||||..|.|||||.| ||.| |.|||
RBAM_024280__ 476 AGCATTTCAGAGACATTTCAGTTGTCAGCAGAGATTCAT-TCCATTTTAT 524
BSNT_03940___ 528 TATGGCTGTTAAATAA 543
||..||..|||||||.
RBAM_024280__ 525 TACTGCCATTAAATAG 540
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