Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_06249 and RBAM_024130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence pep-align/BSNT_06249___yyaR.1.9828.seq
# -bsequence pep-align/RBAM_024130___yyaR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_06249___yyaR-RBAM_024130___yyaR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06249___yyaR-RBAM_024130___yyaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06249___yyaR
# 2: RBAM_024130___yyaR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 208
# Identity: 73/208 (35.1%)
# Similarity: 95/208 (45.7%)
# Gaps: 84/208 (40.4%)
# Score: 335.5
#
#
#=======================================
BSNT_06249___ 1 MIKKMTQMNLKDFNKPNEPFVVFGRMIPTFENGVWTYTEERFSKPYFKQY 50
||.||||.|:||||||||||||.||:||:||:.|||||||:|::||.|:|
RBAM_024130__ 1 MITKMTQFNMKDFNKPNEPFVVSGRIIPSFEDNVWTYTEEKFAEPYVKKY 50
BSNT_06249___ 51 EDDEMDVSYIEDEGKVVFLYYVENNCIGR--------------------- 79
:|:::||||||:|.||||.||.||:|:||
RBAM_024130__ 51 DDEDIDVSYIEEEDKVVFFYYAENDCVGRSKHERGVKVNYIYKKKEKKNG 100
BSNT_06249___ 80 ---IKIRSNWNGYALIE------DIAVAKDYRQKGVGTALLHKAIEWAKE 120
|.||..|.. |||| .|.:..:||.: |.
RBAM_024130__ 101 NCIISIRDKWEN-ALIEFGQKNNQIEIMINYRNE--------------KT 135
BSNT_06249___ 121 NRFCGLMLET-----QDINVSACRFYAKHHFIIGAVDTMLYSNLPTANEI 165
.:. .|.:|| :||.:.....
RBAM_024130__ 136 TKL-SLPIETFEKVYEDIKIGRRES------------------------- 159
BSNT_06249___ 166 AIFWYYKF 173
RBAM_024130__ 159 -------- 159
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