Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06249 and RBAM_024130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence dna-align/BSNT_06249___yyaR.1.9828.seq
# -bsequence dna-align/RBAM_024130___yyaR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06249___yyaR-RBAM_024130___yyaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06249___yyaR-RBAM_024130___yyaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06249___yyaR
# 2: RBAM_024130___yyaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 571
# Identity: 340/571 (59.5%)
# Similarity: 340/571 (59.5%)
# Gaps: 140/571 (24.5%)
# Score: 1020.5
#
#
#=======================================
BSNT_06249___ 1 ATGATCAAGAAAATGACTCAAATGAATTTGAAAGATTTCAATAAACCAAA 50
|||||.|..||||||||.|||.|.|||.|||||||.||||||||||||||
RBAM_024130__ 1 ATGATAACTAAAATGACGCAATTCAATATGAAAGACTTCAATAAACCAAA 50
BSNT_06249___ 51 CGAACCTTTCGTTGTTTTTGGGAGAATGATACCTACTTTTGAAAACGGTG 100
|||||||||||||||||..||||||||.||.|||.|.|||||..||..||
RBAM_024130__ 51 CGAACCTTTCGTTGTTTCAGGGAGAATCATCCCTTCATTTGAGGACAATG 100
BSNT_06249___ 101 TTTGGACATATACTGAGGAACGATTTTCTAAACCTTATTTTAAACAATAT 150
|||||||||||||.|||||...||||.||.||||||||.|.|||.|||||
RBAM_024130__ 101 TTTGGACATATACAGAGGAGAAATTTGCTGAACCTTATGTCAAAAAATAT 150
BSNT_06249___ 151 GAAGATGATGAAATGGATGTTAGTTATATTGAAGATGAAGGGAAGGTTGT 200
||.|||||.||.||.|||||.||||||||||||||.||.|..||.|||||
RBAM_024130__ 151 GACGATGAAGACATTGATGTCAGTTATATTGAAGAAGAGGATAAAGTTGT 200
BSNT_06249___ 201 CTTTTTATATTATGTTGAAAACAACTGCATCGGCCGGATTAAG-ATTCGT 249
||||||.|||||.|..||.|||.||||..|||||||||.|||| ||
RBAM_024130__ 201 CTTTTTTTATTACGCAGAGAACGACTGTGTCGGCCGGAGTAAGCAT---- 246
BSNT_06249___ 250 TCTAACTGGAATGGGTA-TGCACTAATAGAG-GACATTGCCGTT----GC 293
|||.|||.| | ||.|| || |||.|..|| |.
RBAM_024130__ 247 --------GAAAGGGGAGT-------TAAAGTGA-ATTACATTTATAAGA 280
BSNT_06249___ 294 AAAA-GACTATAGACAAAAAGGCGTTGGAACA--GCATTATTACATAAAG 340
|||| || |.|.||||| ||||| | |.||.|||.||...||
RBAM_024130__ 281 AAAAGGA----AAAGAAAAA-----TGGAA-ATTGTATCATTTCAATCAG 320
BSNT_06249___ 341 CGATTGAGTGGGCAAA--GGAGAATCGTTTTTGTGGTCTTAT---GCTTG 385
.||| ||| |||||| ||..||||| |.|||
RBAM_024130__ 321 AGAT---------AAATGGGAGAA---------TGCACTTATTGAGTTTG 352
BSNT_06249___ 386 AAACACAAGATATTAATGTTTCAGCTTGTCGTTTTTATGCCAAACATC-- 433
.||||.|.|.||| |||..|||...||.|.|| |||..|||
RBAM_024130__ 353 ---GACAAAAAAATAA----TCAAATTGAGATTATGAT--CAATTATCGT 393
BSNT_06249___ 434 -ACTTTATAATAGGTGCAGTTGATACGATGCTTTATTCCAACCTTCCAAC 482
||...|.||.| ||.|.||||| || ||.||
RBAM_024130__ 394 AACGAGAAAACA------------ACCAAGCTTT----CA--CTGCC--- 422
BSNT_06249___ 483 AGCAAATGAAATTGCGATTTTT-------TGGTACTATAA--ATTTTAA- 522
|||.|.||.|||| || |||.| ||.||||
RBAM_024130__ 423 ---------AATCGAGACTTTTGAGAAAGTG----TATGAGGATATTAAA 459
BSNT_06249___ 522 --------------------- 522
RBAM_024130__ 460 ATAGGCCGGAGAGAAAGTTAA 480
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