Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03788 and RBAM_023740

See DNA alignment / Visit BSNT_03788 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence pep-align/BSNT_03788___yqeU.1.9828.seq
#    -bsequence pep-align/RBAM_023740___yqeU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03788___yqeU-RBAM_023740___yqeU.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03788___yqeU-RBAM_023740___yqeU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03788___yqeU
# 2: RBAM_023740___yqeU
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     197/256 (77.0%)
# Similarity:   223/256 (87.1%)
# Gaps:           0/256 ( 0.0%)
# Score: 1040.0
# 
#
#=======================================

BSNT_03788___      1 MQRYFIELTKQQIEEAPAFSITGEDVHHIVNVMRMNEGDQIICCSQDGFE     50
                     |||||||||||:::|.|.|.|||||||||.|||||:.||:|||||:||.|
RBAM_023740__      1 MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHE     50

BSNT_03788___     51 AKCELQSVSKDKVSCLVIEWTNKNRELPIKVYIASGLPKGDKLEWIIQKG    100
                     |.|.|:.||||.:||.:.|||.:|||||:|:.||||||||||||||||||
RBAM_023740__     51 ALCLLKEVSKDHISCSIAEWTGENRELPLKIRIASGLPKGDKLEWIIQKG    100

BSNT_03788___    101 TELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPR    150
                     |||||..|||||.|||||||||||||||||||.||||||||||||||:|.
RBAM_023740__    101 TELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAAEQSYRNEIPE    150

BSNT_03788___    151 VMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLL    200
                     |..||:|:|||:..::.|||||||||||||||..||:|.:.|||:|||||
RBAM_023740__    151 VKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL    200

BSNT_03788___    201 IVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQTE    250
                     |||||||||||:||.:|:|:..|.||||||||||||||||||||:||.||
RBAM_023740__    201 IVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLYALSAVSYHTE    250

BSNT_03788___    251 LLRGDQ    256
                     ||||||
RBAM_023740__    251 LLRGDQ    256


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