Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03788 and RBAM_023740

See Amino acid alignment / Visit BSNT_03788 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_03788___yqeU.1.9828.seq
#    -bsequence dna-align/RBAM_023740___yqeU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03788___yqeU-RBAM_023740___yqeU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03788___yqeU-RBAM_023740___yqeU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03788___yqeU
# 2: RBAM_023740___yqeU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     602/787 (76.5%)
# Similarity:   602/787 (76.5%)
# Gaps:          32/787 ( 4.1%)
# Score: 2230.0
# 
#
#=======================================

BSNT_03788___      1 ATGCAACGATATTTTATCGAGCTCACGAAGCAGCAAATAGAGGAAGCGCC     50
                     |||||||||||||||||||||||||||||||||.|.||.||.|||.|.||
RBAM_023740__      1 ATGCAACGATATTTTATCGAGCTCACGAAGCAGGAGATGGACGAAACTCC     50

BSNT_03788___     51 GGCTTTTTCGATTACCGGCGAAGATGTTCATCATATTGTGAACGTGATGA    100
                     .|.||||...||.||.||.|||||.||.||.|||||.|.||||||.||||
RBAM_023740__     51 TGATTTTCAAATCACGGGGGAAGACGTCCACCATATAGCGAACGTCATGA    100

BSNT_03788___    101 GAATGAATGAGGGAGATCAGATTATCTGCTGCTCTCAAGACGGCTTCGAG    150
                     ||||||.||.||||||.|.||||||||||||.||..||||||||...||.
RBAM_023740__    101 GAATGAGTGCGGGAGACCGGATTATCTGCTGTTCGAAAGACGGCCATGAA    150

BSNT_03788___    151 GCAAAATG--TGAACTTCAATCTGTTTCCAAAGATAAAGTGTCCTGC--C    196
                     ||...|||  ||  |||.||...|||||.||||||.|..|.||.|||  |
RBAM_023740__    151 GCGTTATGCCTG--CTTAAAGAGGTTTCTAAAGATCATATATCATGCAGC    198

BSNT_03788___    197 TTGTGATAGAATGGACGAATAAAAACAGAGAGCTTCCGATAAAGGTCTAT    246
                     .| ||.| |||||||||..|.|||||.|.||.||.||..|.|||.||...
RBAM_023740__    199 AT-TGCT-GAATGGACGGGTGAAAACCGTGAACTGCCTCTGAAGATCAGG    246

BSNT_03788___    247 ATTGCGAGCGGCCTTCCGAAAGGAGATAAGCTTGAATGGATTATTCAAAA    296
                     ||.||.||||||||.||||||||.||||||||||||||||||||.|||||
RBAM_023740__    247 ATCGCCAGCGGCCTCCCGAAAGGCGATAAGCTTGAATGGATTATCCAAAA    296

BSNT_03788___    297 GGGGACTGAGCTCGGAGC---TCATGCCTTTATTCCTTTCCAAGCCGCGC    343
                     .|||||.|||||.||.||   | |||  ||.||.|||||.||||.|||..
RBAM_023740__    297 AGGGACCGAGCTGGGGGCAAGT-ATG--TTCATCCCTTTTCAAGGCGCCA    343

BSNT_03788___    344 GTTCTGTTGTCAAGCTGGATGACAAAAAGGCAAAGAAAAAGCGGGAAAGA    393
                     |.||.||.||.|||||.||.||||||||||||||||||||||||||.|||
RBAM_023740__    344 GATCCGTCGTTAAGCTAGACGACAAAAAGGCAAAGAAAAAGCGGGAGAGA    393

BSNT_03788___    394 TGGACGAAAATTGCAAAGGAAGCGGCTGAGCAATCGTACCGTAACGAAGT    443
                     |||.|||||||.||.|||||||||||.||||||||||||||.||.|||.|
RBAM_023740__    394 TGGGCGAAAATCGCGAAGGAAGCGGCGGAGCAATCGTACCGCAATGAAAT    443

BSNT_03788___    444 GCCGCG-AGTGATGGATGTCCATTCTTTTCAGCAGCTTCTTCAAAGGATG    492
                     .|| || |||||.....||.|||.|.||.|.||||||.|||.|||.|..|
RBAM_023740__    444 TCC-CGAAGTGAAAACCGTTCATACGTTCCGGCAGCTGCTTGAAATGGCG    492

BSNT_03788___    493 CAGGATTTCGATAAATGTGTCGTTGCATACGAGGAGTCATCGAAGCAAGG    542
                     .||.||.||||||||||||||||||||||||||||||||||.|||||.||
RBAM_023740__    493 GAGAATGTCGATAAATGTGTCGTTGCATACGAGGAGTCATCAAAGCAGGG    542

BSNT_03788___    543 GGAAATAAGCGCATTCAGC-GCGATTGTAAGC-----AGCCTTCCGAAAG    586
                     .||||...||||.||| || |||     .|||     |||||||||.|||
RBAM_023740__    543 AGAAACGGGCGCTTTC-GCTGCG-----GAGCTCAAAAGCCTTCCGCAAG    586

BSNT_03788___    587 GATCATCTCTATTGATCGTATTTGGTCCAGAAGGCGGTTTAACAGAAGCT    636
                     |.||.|||||.||.||||||||.||.||.|||||||||.|.||.||..||
RBAM_023740__    587 GTTCGTCTCTTTTAATCGTATTCGGCCCTGAAGGCGGTCTGACTGAGTCT    636

BSNT_03788___    637 GAGGTTGAACGGCTCACAGAGCAAGACG--GTGTGACGTGCGGCCTTGGA    684
                     ||.|||.|.|.|||..||||..|||.||  ||.|.|  ||||||||.|||
RBAM_023740__    637 GAAGTTCATCAGCTTTCAGAAAAAGGCGCCGTCTTA--TGCGGCCTCGGA    684

BSNT_03788___    685 CCGAGAATTTTAAGGACAGAAACCGCTCCGCTATACGCATTGAGCGCGAT    734
                     ||||||||||||.||||.|||||.||.||.||.|||||.||.|||||..|
RBAM_023740__    685 CCGAGAATTTTACGGACTGAAACTGCGCCTCTTTACGCGTTAAGCGCAGT    734

BSNT_03788___    735 TTCTTATCAAACAGAGTTATTAAGAGGTGATCAGTAA    771
                     |||.|||||.|||||||||||||||||||||||||||
RBAM_023740__    735 TTCCTATCATACAGAGTTATTAAGAGGTGATCAGTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03788 and RBAM_023740

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
