Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_03778 and RBAM_023650

See DNA alignment / Visit BSNT_03778 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence pep-align/BSNT_03778___yqfD.1.9828.seq
#    -bsequence pep-align/RBAM_023650___yqfD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03778___yqfD-RBAM_023650___yqfD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03778___yqfD-RBAM_023650___yqfD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03778___yqfD
# 2: RBAM_023650___yqfD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 398
# Identity:     307/398 (77.1%)
# Similarity:   346/398 (86.9%)
# Gaps:           4/398 ( 1.0%)
# Score: 1604.5
# 
#
#=======================================

BSNT_03778___      1 MKNKWLSFFSGKVQLELTGRGIERLLNECTRQGIPVFHVKKKKEAVSLYI     50
                     ||||||||||||||:|:.|:|||||||||||.||.:|.||||::.|.|.|
RBAM_023650__      1 MKNKWLSFFSGKVQVEVKGKGIERLLNECTRNGIAIFAVKKKQDCVLLMI     50

BSNT_03778___     51 QLQDVHAFRRVRSKFKCKARFIHRKGFPFLLLKSKLNIGFTIGFAIFFIL    100
                     |||||||||||..|.:|||.|..|||.||||||||||:|||.||.|||::
RBAM_023650__     51 QLQDVHAFRRVIRKHECKASFTKRKGLPFLLLKSKLNLGFTAGFVIFFVI    100

BSNT_03778___    101 LFLLSNMVWKIDVTGAKPETEHQMRQHLNEIGVKKGRLQFLMMSPEKIQK    150
                     |||||||:|:||:.||||||||||.:||.||||||||||||||:||||||
RBAM_023650__    101 LFLLSNMIWEIDIKGAKPETEHQMVKHLEEIGVKKGRLQFLMMTPEKIQK    150

BSNT_03778___    151 SLTNGIDNITWVGVDLKGTTIHMKVVEKNEPEKEKYVSPRNIVAKKKATI    200
                     ||||||||||||||:|.||.:||||||||||.||||||||:|||||||.|
RBAM_023650__    151 SLTNGIDNITWVGVELNGTALHMKVVEKNEPTKEKYVSPRHIVAKKKAVI    200

BSNT_03778___    201 TRMFVQKGQPMAAIHDHVEKGQLLVSGLIGSEDHQQEVASKAEIYGETWY    250
                     .|||||||||||.::|||:|||||||||||:||  ::|||||||||||||
RBAM_023650__    201 KRMFVQKGQPMAFVNDHVDKGQLLVSGLIGNED--RKVASKAEIYGETWY    248

BSNT_03778___    251 RSEVTVPLETLFNVYTGKVRTKHKLSFGSLAIPIWGMTFKKEELKHPKTE    300
                     :|||||||||.|.:|||||||||||||||..:|.||..|.:|.|||||||
RBAM_023650__    249 KSEVTVPLETSFTLYTGKVRTKHKLSFGSWGVPFWGFGFNEEPLKHPKTE    298

BSNT_03778___    301 QEKHSLHFLGFKLPVSYVKEQTRESEEALRKYTKEEAVQEGIKLGKQDVE    350
                     :|||...|||.|||||||.|||||||.::|.|||.||||.|||:|:||||
RBAM_023650__    299 EEKHPFQFLGMKLPVSYVSEQTRESETSVRTYTKGEAVQAGIKMGRQDVE    348

BSNT_03778___    351 DKIGENGEVKSEKVLHQTVENGKVKLIILYQVIEDIVQTTPIVRETEE    398
                     .::..:|||:|||||||:|||||||||||||||||||||||||:..  
RBAM_023650__    349 KRLNGSGEVESEKVLHQSVENGKVKLIILYQVIEDIVQTTPIVQGD--    394


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.