Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03778 and RBAM_023650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_03778___yqfD.1.9828.seq
# -bsequence dna-align/RBAM_023650___yqfD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03778___yqfD-RBAM_023650___yqfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03778___yqfD-RBAM_023650___yqfD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03778___yqfD
# 2: RBAM_023650___yqfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1215
# Identity: 916/1215 (75.4%)
# Similarity: 916/1215 (75.4%)
# Gaps: 48/1215 ( 4.0%)
# Score: 3394.0
#
#
#=======================================
BSNT_03778___ 1 GTGAAAAATAAATGGCTGTCTTTTTTTTCGGGTAAGGTCCAGCTTGAATT 50
||||||||.|||||||||||.||||||||||||||.|||||..|.|||.|
RBAM_023650__ 1 GTGAAAAACAAATGGCTGTCATTTTTTTCGGGTAAAGTCCAAGTGGAAGT 50
BSNT_03778___ 51 GACGGGAAGAGGGATTGAGCGGCTCCTTAATGAATGCACAAGACAGGGGA 100
.|..||||.|||||||||.|||||.||.||||||||.||.|||.|.||.|
RBAM_023650__ 51 CAAAGGAAAAGGGATTGAACGGCTGCTGAATGAATGTACGAGAAACGGAA 100
BSNT_03778___ 101 TTCCGGTCTTTCATGTCAAAAAAAAGAAAGAAGCCGTATCGTTAT----A 146
|..|..|||||...||.|||||||||.|||| |.|| |||.| |
RBAM_023650__ 101 TCGCCATCTTTGCGGTGAAAAAAAAGCAAGA--CTGT---GTTCTGCTGA 145
BSNT_03778___ 147 T-ATACAGCTTCAGGATGTACATGCCTTTC-GGCGGGTGAGAAGTAAATT 194
| ||.||||||||.|||||||||| ||||| |..|.||.|..||.|||..
RBAM_023650__ 146 TGATTCAGCTTCAAGATGTACATG-CTTTCAGAAGAGTCATCAGAAAACA 194
BSNT_03778___ 195 TAAATGTAAAGCCCGATTTATCCATCGGAAGGGTTTTCCCTTCCTGTTGC 244
|.||||.|||||..|.||||...|..|.||||||.|||||||.|||.|.|
RBAM_023650__ 195 TGAATGCAAAGCAAGCTTTACAAAAAGAAAGGGTCTTCCCTTTCTGCTTC 244
BSNT_03778___ 245 TGAAATCAAAGCTGAATATAGGGTTTACGATCGGTTTTGCGATTTTTTTC 294
|.||||||||..|.|||.|.||.||.||....||.||||.|||.|||||.
RBAM_023650__ 245 TCAAATCAAAATTAAATCTGGGCTTCACTGCGGGATTTGTGATATTTTTT 294
BSNT_03778___ 295 ATCCTTTTGTTTTTGCTGTCCAATATGGTGTGGAAAATTGATGTGACAGG 344
.|..|.||||||.|..|||||||.|||.|.|||.||||||||.|.|.|||
RBAM_023650__ 295 GTTATATTGTTTCTTTTGTCCAACATGATTTGGGAAATTGATATTAAAGG 344
BSNT_03778___ 345 CGCTAAGCCTGAAACAGAACATCAAATGAGGCAGCATCTTAATGAAATCG 394
.||.|||||.|||||.||.|||||.|||....||||.|||.|.|||||||
RBAM_023650__ 345 GGCCAAGCCCGAAACCGAGCATCAGATGGTAAAGCACCTTGAAGAAATCG 394
BSNT_03778___ 395 GCGTCAAAAAGGGCCGTCTGCAGTTTTTAATGATGTCGCCCGAAAAAATA 444
|.||.|||||.||||||.||||.||||||||||||.||||.||.|||||.
RBAM_023650__ 395 GTGTGAAAAAAGGCCGTTTGCAATTTTTAATGATGACGCCGGAGAAAATT 444
BSNT_03778___ 445 CAGAAATCATTAACCAATGGAATAGACAATATCACTTGGGTCGGAGTTGA 494
||.|||||||||||.||.||.||.||.|||||.||.||||||||.||.||
RBAM_023650__ 445 CAAAAATCATTAACAAACGGCATCGATAATATTACGTGGGTCGGTGTGGA 494
BSNT_03778___ 495 TCTGAAGGGGACGACCATTCACATGAAAGTTGTGGAGAAAAATGAGCCCG 544
..||||.|||||..||.||||.||||||||.||.||.||.||.|| .|||
RBAM_023650__ 495 ATTGAACGGGACAGCCCTTCATATGAAAGTGGTCGAAAAGAACGA-ACCG 543
BSNT_03778___ 545 A-AAAAGAAAAGTATGTTAGCCCGCGCAATATTGTCGCCAAAAAGAAAGC 593
| ||||||||||||.||.|||||.|||.||||.||.|||||||||||.||
RBAM_023650__ 544 ACAAAAGAAAAGTACGTAAGCCCCCGCCATATCGTTGCCAAAAAGAAGGC 593
BSNT_03778___ 594 AACCATTACGAGAATGTTTGTGCAAAAAGGACAGCCCATGGCCGCCATAC 643
...|||.|..||.|||||.||||||||.||.|||||.|||||.....|..
RBAM_023650__ 594 GGTCATCAAAAGGATGTTCGTGCAAAAGGGGCAGCCGATGGCTTTTGTGA 643
BSNT_03778___ 644 ACGATCATGTTGAAAAGGGGCAGCTGCTTGTTTCGGGACTGATCGGCAGC 693
|||||||||||||.||.||.|||||.||.||.||.|||||||||||.|..
RBAM_023650__ 644 ACGATCATGTTGACAAAGGACAGCTCCTCGTCTCAGGACTGATCGGAAAT 693
BSNT_03778___ 694 GAAGACCATCAGCAGG-AAGTCGCCTCAAAAGCAGAAATTTACGGAGAAA 742
||||||| || ||||||||||||||||.||||||||||||||||
RBAM_023650__ 694 GAAGACC-------GGAAAGTCGCCTCAAAAGCGGAAATTTACGGAGAAA 736
BSNT_03778___ 743 CCTGGTATAGATCAGAAGTGACAGTCCCGCTTGAAACATTATTTAACG-T 791
|.|||||.|..||||||||.||.||.||.||||||||||.|||| ||| |
RBAM_023650__ 737 CATGGTACAAGTCAGAAGTAACCGTGCCCCTTGAAACATCATTT-ACGCT 785
BSNT_03778___ 792 CTATACGGGCAAAGTAAGGACAAAGCACAAGCTTTCTTTTGGTTCTTTGG 841
.||||||||.|||||||||||.|||||||||||.|||||.||.||.|.||
RBAM_023650__ 786 ATATACGGGTAAAGTAAGGACGAAGCACAAGCTGTCTTTCGGATCATGGG 835
BSNT_03778___ 842 CAATCCCGATCTGGGGGATGACGTTTAAAAAAGAGGAATTGAAGCATCCA 891
...|.||..|.|||||..|...||||||..|.|||....||||.|||||.
RBAM_023650__ 836 GCGTGCCTTTTTGGGGCTTCGGGTTTAATGAGGAGCCGCTGAAACATCCG 885
BSNT_03778___ 892 AAAACAGAACAAGAAAAGCATTCGCTTCATTTTCTCGGATTTAAGCTCCC 941
||||||||..|||||||||||.||.||||.|||||.||..|.|||||.||
RBAM_023650__ 886 AAAACAGAGGAAGAAAAGCATCCGTTTCAATTTCTGGGGATGAAGCTTCC 935
BSNT_03778___ 942 TGTATCCTATGTCAAAGAGCAAACGAGAGAAAGTGAAGAGGCTTTGCGAA 991
.||.||.||.||...|||.||.||.||||||||||||....|..||||.|
RBAM_023650__ 936 GGTTTCTTACGTTTCAGAACAGACAAGAGAAAGTGAAACATCCGTGCGGA 985
BSNT_03778___ 992 AATATACGAAAGAAGAAGCAGTTCAAGAAGGCATTAAATTGGGTAAACAG 1041
..||||||||||..|||||.|||||.|..||.||.|||.||||.|.|||.
RBAM_023650__ 986 CTTATACGAAAGGCGAAGCGGTTCAGGCCGGTATCAAAATGGGAAGACAA 1035
BSNT_03778___ 1042 GATGTAGAGGATAAAATAGGCGA--AAACGGC------GAGGTGAAAAGT 1083
||||||| |||| |||| ||||||| ||||||.|||||
RBAM_023650__ 1036 GATGTAG-----AAAA---GCGATTAAACGGCAGCGGAGAGGTGGAAAGT 1077
BSNT_03778___ 1084 GAAAAAGTTTTGCACCAGACTGTTGAGAATGGTAAAGTAAAGTTGATTAT 1133
|||||||||||||||||..|.|||||||||||||||||||||||||||||
RBAM_023650__ 1078 GAAAAAGTTTTGCACCAATCCGTTGAGAATGGTAAAGTAAAGTTGATTAT 1127
BSNT_03778___ 1134 TCTCTACCAAGTTATAGAAGATATCGTTCAAACCACACCTATTG-TCAGG 1182
|||||||||||||||||||||||||||||||||||||||||||| |||||
RBAM_023650__ 1128 TCTCTACCAAGTTATAGAAGATATCGTTCAAACCACACCTATTGTTCAGG 1177
BSNT_03778___ 1183 GAGACTGAAGAATGA 1197
||||||.|
RBAM_023650__ 1178 GAGACTAA------- 1185
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