Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03695 and RBAM_023080

See DNA alignment / Visit BSNT_03695 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence pep-align/BSNT_03695___yqhA.1.9828.seq
#    -bsequence pep-align/RBAM_023080___yqhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03695___yqhA
# 2: RBAM_023080___yqhA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     178/285 (62.5%)
# Similarity:   207/285 (72.6%)
# Gaps:          16/285 ( 5.6%)
# Score: 829.5
# 
#
#=======================================

BSNT_03695___      1 ----MIALDQHLTEHKEDITQQWLEVCTSKGSWLYSAKDQQKLEQKLKDQ     46
                         ...|.:.|.|...:||:|||.:..|.     ...|.||.|.    |
RBAM_023080__      1 MKHLSETLSRTLIEESGEITRQWLLIPKSG-----RPSDDQKAEM----Q     41

BSNT_03695___     47 HELLVTIVAKSLRKED-VEDELNRWSLQCARDRAVHEVTVTQSVGHFNTF     95
                     |.||:.|||..|.::| .|:||.:|:||.|||||||||.|.:||..|..|
RBAM_023080__     42 HRLLIEIVAGILSEKDGGEEELTKWALQFARDRAVHEVPVYESVTSFKEF     91

BSNT_03695___     96 RHIMFEWIQKFSEASSQDISIQEFYEWSRILNQNIDEIIEVFTEEYHQVT    145
                     |.:::..||...|..|:.......::|...||:.||.:||||||||::||
RBAM_023080__     92 RRLVWNRIQTCCETMSEKPGANAVFQWGEKLNKAIDHMIEVFTEEYYKVT    141

BSNT_03695___    146 MIQLNAQKEMINELSAPIMPITDGIGILPLVGEIDTHRARTILESVLEQC    195
                     :.|||||||||||||||||||.||||||||||||||:||:.||||||:||
RBAM_023080__    142 VTQLNAQKEMINELSAPIMPIADGIGILPLVGEIDTYRAKMILESVLDQC    191

BSNT_03695___    196 SALKLSYLFLDISGVPIVDTMVAYQIFKVIDSTKLLGIETIISGIRPEIA    245
                     |:|:||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_023080__    192 SSLRLSYLFLDISGVPIVDTMVAYQIFKVIDSTKLLGIETTISGIRPEIA    241

BSNT_03695___    246 QTVVKLGLDFSNVKTEQSLAKALANKGFKIKEC--    278
                     |||||||:|||.||||||||||||..||.:||.  
RBAM_023080__    242 QTVVKLGIDFSQVKTEQSLAKALAKNGFIVKESLR    276


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.