Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03695 and RBAM_023080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03695___yqhA.1.9828.seq
# -bsequence dna-align/RBAM_023080___yqhA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03695___yqhA
# 2: RBAM_023080___yqhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 917
# Identity: 580/917 (63.2%)
# Similarity: 580/917 (63.2%)
# Gaps: 166/917 (18.1%)
# Score: 1801.0
#
#
#=======================================
BSNT_03695___ 1 --------------------ATGATAGCTCTTGATCAGCACTTAACAGAG 30
||.| |||.||.| |||||..|
RBAM_023080__ 1 GTGAAACATTTGAGTGAAACATTA----TCTCGAAC----CTTAATTG-- 40
BSNT_03695___ 31 CACAAAGAA------GATATCACGCAACAATGGCTGGAAGTTTGTACGTC 74
||||| ||.|||||.|..||.||||| |.|..||| |
RBAM_023080__ 41 ----AAGAATCAGGTGAAATCACACGCCAGTGGCT----GCTCATAC--C 80
BSNT_03695___ 75 AAAA--GGCAGCTGGCTGTATTCAGCGAAAGATCAGCAAAAACTAGAACA 122
|||| || |||.|..||||| |.||||||
RBAM_023080__ 81 AAAATCGG-----GGCGGCCTTCAG---ATGATCAG-------------- 108
BSNT_03695___ 123 AAAG-TTAAAAGACCAGCA-------TGAATT---ATTGGTGAC--CATC 159
|||| ..|||.| ||||| |.|||| ||.|.||.| |||.
RBAM_023080__ 109 AAAGCGGAAATG--CAGCACCGTCTGTTAATTGAAATCGTTGCCGGCATT 156
BSNT_03695___ 160 GTAGCAAAATCCCTTAGAAAAGAAGACGTAGAGGATGAGCT--CAACCGG 207
.||.|..| ||||||.|.||..||.||.||||| ||| .|
RBAM_023080__ 157 CTATCGGA---------AAAAGACGGCGGGGAAGAGGAGCTGACAA--AG 195
BSNT_03695___ 208 TGGTCTCTTCAATGCGCCAGAGACCGTGCCGTTCATGAAGTGACGGT-TA 256
|||.|.|||||.|..||.||.|||||.|||||.||||||||..|||| ||
RBAM_023080__ 196 TGGGCGCTTCAGTTTGCAAGGGACCGGGCCGTCCATGAAGTACCGGTCTA 245
BSNT_03695___ 257 CACAAAGTGTC---GGCCATTTTAACACCTTCAGGCACATCATGTTTGAA 303
..||||.||| .|| |||||....|||.|| |..||.|..
RBAM_023080__ 246 -TGAAAGCGTCACGAGC---TTTAAAGAATTCCGG------AGATTGGTC 285
BSNT_03695___ 304 TGG------ATTCAGAAATTCAGCGAAGCTTCTTCTCAAGACATCAGC-- 345
||| ||.||||.||.|.|.|||.|....||| ||.| |||
RBAM_023080__ 286 TGGAACCGCATACAGACATGCTGTGAAACGATGTCT---GAGA--AGCCT 330
BSNT_03695___ 346 -------ATTCAGGAATT----TTATGAGTGGAGCCGGATCTTGAATCAA 384
||.| ||.||| |...|||.|.||| |||| |||
RBAM_023080__ 331 GGGGCGAATGC-GGTATTCCAATGGGGAGAGAAGC-------TGAA-CAA 371
BSNT_03695___ 385 AAC-ATTGATGAGATCATCGAAGTGTTTACGGAAGAATATCACCAGGTGA 433
|.| |||||..|.||.||.|||||.|||||.||.||||||.|..|.||||
RBAM_023080__ 372 AGCAATTGACCATATGATTGAAGTATTTACAGAGGAATATTATAAAGTGA 421
BSNT_03695___ 434 CCATGATACAATTAAACGCGCAAAAAGAAATGATTAATGAATTGAGTGCG 483
|..|.|.||||||||||||.|||||||||||||||||.|||.|.||||||
RBAM_023080__ 422 CTGTTACACAATTAAACGCCCAAAAAGAAATGATTAACGAACTAAGTGCG 471
BSNT_03695___ 484 CCGATTATGCCGATTACTGATGGAATTGGGATTCTTCCGCTTGTCGGTGA 533
|||||||||||||||.|.||.||.|||||.|||.|.|||||.|||||.||
RBAM_023080__ 472 CCGATTATGCCGATTGCCGACGGTATTGGAATTTTGCCGCTCGTCGGCGA 521
BSNT_03695___ 534 AATTGATACGCACAGAGCGAGGACGATTTTGGAGTCTGTGCTGGAGCAGT 583
||||||.||..||.|.||.|..|.|||||||||.||.|||||.||.||.|
RBAM_023080__ 522 AATTGACACCTACCGGGCAAAAATGATTTTGGAATCGGTGCTTGATCAAT 571
BSNT_03695___ 584 G-------CTCAGCGTTAAAGCTCTCGTATTTATTTTTAGATATTTCGGG 626
| ||| ||| ||.||.|||||||||||||||||.||.||
RBAM_023080__ 572 GTTCTTCACTC--CGT-----CTTTCTTATTTATTTTTAGATATATCAGG 614
BSNT_03695___ 627 CGTTCCTATCGTTGATACCATGGTAGCCTATCAAATTTTTAAAGTGATTG 676
.||.||.||.||.|||||.|||||.||.|||||.||||||||||||||||
RBAM_023080__ 615 TGTGCCGATTGTGGATACGATGGTCGCTTATCAGATTTTTAAAGTGATTG 664
BSNT_03695___ 677 ACAGCACCAAATTGCTCGGCATTGAGACGATTATTTCAGGAATCAGGCCG 726
|||||||.|||.|.||.|||||.||.||||..||.|||||.|||||||||
RBAM_023080__ 665 ACAGCACAAAACTTCTTGGCATAGAAACGACAATCTCAGGCATCAGGCCG 714
BSNT_03695___ 727 GAAATTGCCCAAACTGTCGTGAAGCTGGGTCTGGATTTTTCGAATGTGAA 776
|||||.||.||.||.|||||||||||.||..|.||||||||..|.|||||
RBAM_023080__ 715 GAAATCGCGCAGACCGTCGTGAAGCTCGGCATCGATTTTTCTCAGGTGAA 764
BSNT_03695___ 777 AACCGAGCAAAGTCTTGCTAAAGCCCTGGCCAATAAAGGGTTTAAAATAA 826
|||.|||||.|||||.||.|||||.|||||.||.||.||.||||...|||
RBAM_023080__ 765 AACGGAGCAGAGTCTGGCGAAAGCGCTGGCAAAAAACGGATTTATCGTAA 814
BSNT_03695___ 827 AAGAGT------GTTGA 837
||||.| |.|||
RBAM_023080__ 815 AAGAATCATTAAGATGA 831
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