Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03695 and RBAM_023080

See Amino acid alignment / Visit BSNT_03695 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_03695___yqhA.1.9828.seq
#    -bsequence dna-align/RBAM_023080___yqhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03695___yqhA-RBAM_023080___yqhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03695___yqhA
# 2: RBAM_023080___yqhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 917
# Identity:     580/917 (63.2%)
# Similarity:   580/917 (63.2%)
# Gaps:         166/917 (18.1%)
# Score: 1801.0
# 
#
#=======================================

BSNT_03695___      1 --------------------ATGATAGCTCTTGATCAGCACTTAACAGAG     30
                                         ||.|    |||.||.|    |||||..|  
RBAM_023080__      1 GTGAAACATTTGAGTGAAACATTA----TCTCGAAC----CTTAATTG--     40

BSNT_03695___     31 CACAAAGAA------GATATCACGCAACAATGGCTGGAAGTTTGTACGTC     74
                         |||||      ||.|||||.|..||.|||||    |.|..|||  |
RBAM_023080__     41 ----AAGAATCAGGTGAAATCACACGCCAGTGGCT----GCTCATAC--C     80

BSNT_03695___     75 AAAA--GGCAGCTGGCTGTATTCAGCGAAAGATCAGCAAAAACTAGAACA    122
                     ||||  ||     |||.|..|||||   |.||||||              
RBAM_023080__     81 AAAATCGG-----GGCGGCCTTCAG---ATGATCAG--------------    108

BSNT_03695___    123 AAAG-TTAAAAGACCAGCA-------TGAATT---ATTGGTGAC--CATC    159
                     |||| ..|||.|  |||||       |.||||   ||.|.||.|  |||.
RBAM_023080__    109 AAAGCGGAAATG--CAGCACCGTCTGTTAATTGAAATCGTTGCCGGCATT    156

BSNT_03695___    160 GTAGCAAAATCCCTTAGAAAAGAAGACGTAGAGGATGAGCT--CAACCGG    207
                     .||.|..|         ||||||.|.||..||.||.|||||  |||  .|
RBAM_023080__    157 CTATCGGA---------AAAAGACGGCGGGGAAGAGGAGCTGACAA--AG    195

BSNT_03695___    208 TGGTCTCTTCAATGCGCCAGAGACCGTGCCGTTCATGAAGTGACGGT-TA    256
                     |||.|.|||||.|..||.||.|||||.|||||.||||||||..|||| ||
RBAM_023080__    196 TGGGCGCTTCAGTTTGCAAGGGACCGGGCCGTCCATGAAGTACCGGTCTA    245

BSNT_03695___    257 CACAAAGTGTC---GGCCATTTTAACACCTTCAGGCACATCATGTTTGAA    303
                      ..||||.|||   .||   |||||....|||.||      |..||.|..
RBAM_023080__    246 -TGAAAGCGTCACGAGC---TTTAAAGAATTCCGG------AGATTGGTC    285

BSNT_03695___    304 TGG------ATTCAGAAATTCAGCGAAGCTTCTTCTCAAGACATCAGC--    345
                     |||      ||.||||.||.|.|.|||.|....|||   ||.|  |||  
RBAM_023080__    286 TGGAACCGCATACAGACATGCTGTGAAACGATGTCT---GAGA--AGCCT    330

BSNT_03695___    346 -------ATTCAGGAATT----TTATGAGTGGAGCCGGATCTTGAATCAA    384
                            ||.| ||.|||    |...|||.|.|||       |||| |||
RBAM_023080__    331 GGGGCGAATGC-GGTATTCCAATGGGGAGAGAAGC-------TGAA-CAA    371

BSNT_03695___    385 AAC-ATTGATGAGATCATCGAAGTGTTTACGGAAGAATATCACCAGGTGA    433
                     |.| |||||..|.||.||.|||||.|||||.||.||||||.|..|.||||
RBAM_023080__    372 AGCAATTGACCATATGATTGAAGTATTTACAGAGGAATATTATAAAGTGA    421

BSNT_03695___    434 CCATGATACAATTAAACGCGCAAAAAGAAATGATTAATGAATTGAGTGCG    483
                     |..|.|.||||||||||||.|||||||||||||||||.|||.|.||||||
RBAM_023080__    422 CTGTTACACAATTAAACGCCCAAAAAGAAATGATTAACGAACTAAGTGCG    471

BSNT_03695___    484 CCGATTATGCCGATTACTGATGGAATTGGGATTCTTCCGCTTGTCGGTGA    533
                     |||||||||||||||.|.||.||.|||||.|||.|.|||||.|||||.||
RBAM_023080__    472 CCGATTATGCCGATTGCCGACGGTATTGGAATTTTGCCGCTCGTCGGCGA    521

BSNT_03695___    534 AATTGATACGCACAGAGCGAGGACGATTTTGGAGTCTGTGCTGGAGCAGT    583
                     ||||||.||..||.|.||.|..|.|||||||||.||.|||||.||.||.|
RBAM_023080__    522 AATTGACACCTACCGGGCAAAAATGATTTTGGAATCGGTGCTTGATCAAT    571

BSNT_03695___    584 G-------CTCAGCGTTAAAGCTCTCGTATTTATTTTTAGATATTTCGGG    626
                     |       |||  |||     ||.||.|||||||||||||||||.||.||
RBAM_023080__    572 GTTCTTCACTC--CGT-----CTTTCTTATTTATTTTTAGATATATCAGG    614

BSNT_03695___    627 CGTTCCTATCGTTGATACCATGGTAGCCTATCAAATTTTTAAAGTGATTG    676
                     .||.||.||.||.|||||.|||||.||.|||||.||||||||||||||||
RBAM_023080__    615 TGTGCCGATTGTGGATACGATGGTCGCTTATCAGATTTTTAAAGTGATTG    664

BSNT_03695___    677 ACAGCACCAAATTGCTCGGCATTGAGACGATTATTTCAGGAATCAGGCCG    726
                     |||||||.|||.|.||.|||||.||.||||..||.|||||.|||||||||
RBAM_023080__    665 ACAGCACAAAACTTCTTGGCATAGAAACGACAATCTCAGGCATCAGGCCG    714

BSNT_03695___    727 GAAATTGCCCAAACTGTCGTGAAGCTGGGTCTGGATTTTTCGAATGTGAA    776
                     |||||.||.||.||.|||||||||||.||..|.||||||||..|.|||||
RBAM_023080__    715 GAAATCGCGCAGACCGTCGTGAAGCTCGGCATCGATTTTTCTCAGGTGAA    764

BSNT_03695___    777 AACCGAGCAAAGTCTTGCTAAAGCCCTGGCCAATAAAGGGTTTAAAATAA    826
                     |||.|||||.|||||.||.|||||.|||||.||.||.||.||||...|||
RBAM_023080__    765 AACGGAGCAGAGTCTGGCGAAAGCGCTGGCAAAAAACGGATTTATCGTAA    814

BSNT_03695___    827 AAGAGT------GTTGA    837
                     ||||.|      |.|||
RBAM_023080__    815 AAGAATCATTAAGATGA    831


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