Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03588 and RBAM_022380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence pep-align/BSNT_03588___bkdR.1.9828.seq
# -bsequence pep-align/RBAM_022380___bkdR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03588___bkdR-RBAM_022380___bkdR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03588___bkdR-RBAM_022380___bkdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03588___bkdR
# 2: RBAM_022380___bkdR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 692
# Identity: 599/692 (86.6%)
# Similarity: 644/692 (93.1%)
# Gaps: 3/692 ( 0.4%)
# Score: 3035.0
#
#
#=======================================
BSNT_03588___ 1 MQKVLIVGAGKRGTALLHILIKTAIIDIIAVVDKDPEAPGLKEAEQYGIA 50
||||||:||||.|||||.||:||.:|.||||||:||||.||:||.:||||
RBAM_022380__ 1 MQKVLIIGAGKGGTALLQILMKTKLIRIIAVVDQDPEAQGLQEARRYGIA 50
BSNT_03588___ 51 VSSDWKPYIQQKPDIVIHTTGDQAVFDELLQRKHEDTIVMPGKMAYIVFQ 100
.||||||||.:..||:||||||:||.||||..|.|.|||||||:||:|||
RBAM_022380__ 51 TSSDWKPYITEDIDIIIHTTGDKAVMDELLHEKKEQTIVMPGKLAYMVFQ 100
BSNT_03588___ 101 LMEEKQHLIQMLKEQTYKYDRIFNSTHDGMIFIDINEEIILFNHMAEKMV 150
||||||.||||||.||||:|||||||||||||||:||.|||||.||||||
RBAM_022380__ 101 LMEEKQQLIQMLKSQTYKHDRIFNSTHDGMIFIDVNETIILFNQMAEKMV 150
BSNT_03588___ 151 GKKREEVIGRPIKEVIPSTKMPRILKTRVPEYNQKQLLGDHLQIVTTRLP 200
|:|||:||||.||:|:|:||:||||:||.||||||||||.||||||||||
RBAM_022380__ 151 GQKREDVIGRQIKDVVPNTKLPRILETREPEYNQKQLLGKHLQIVTTRLP 200
BSNT_03588___ 201 IIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEAIIQSSDEAIS 250
||||||:||||||||||||||||||||||||||:||||||||||||||||
RBAM_022380__ 201 IIDEGGKLLGALCVFKDITDAVELAEEVTNLKQIRTMLEAIIQSSDEAIS 250
BSNT_03588___ 251 VVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRR 300
||||||||:||||||||||||||.|||||||:||||||||||||||.|||
RBAM_022380__ 251 VVDENGIGMLINKAYTKMTGLSESEVIGKPASTDISEGESMHLKVLGTRR 300
BSNT_03588___ 301 PVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAELN 350
||||||||||||:|:||||||||||||||||||||||||||||.||||||
RBAM_022380__ 301 PVRGVRMKVGPNKKDVIVNVAPVIVDGILKGSVGVIHDVSEIKTLTAELN 350
BSNT_03588___ 351 RARQIIRTLEAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGT 400
||||||||||||||||||||.|||||||||||||||||||||||||||||
RBAM_022380__ 351 RARQIIRTLEAKYTFDDIIGTSEQMLVALEQAKLGAKTPATILLRGESGT 400
BSNT_03588___ 401 GKELFAHAIHNESDRKYNKFIRVNCAALSENLLESELFGYEDGAFSGAKR 450
||||||||||||||||||||||||||||||:||||||||||:|||:||:|
RBAM_022380__ 401 GKELFAHAIHNESDRKYNKFIRVNCAALSESLLESELFGYEEGAFTGARR 450
BSNT_03588___ 451 GGKKGLFEEANNGSIFLDEIGELTQNMQAKLLRVLQEKEIVRVGGTKAIP 500
|||||||||||||||||||||||||:.|||||||||||||:||||.|||.
RBAM_022380__ 451 GGKKGLFEEANNGSIFLDEIGELTQSTQAKLLRVLQEKEIIRVGGAKAIS 500
BSNT_03588___ 501 VNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPLRQRLEDIEAL 550
||||:|||||||||||||:|.||||||||||||||||||||||.||||||
RBAM_022380__ 501 VNVRIIAATNVNIEKAMAEGAFREDLYYRINRYPISIPPLRQRKEDIEAL 550
BSNT_03588___ 551 SVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIFL 600
|:|||:|||:|||||||||:..||||||||.|||||||||||||||||||
RBAM_022380__ 551 SIRLIEKINQDYGRNVKGLTPNALRALSAYSWPGNVRELENVLGRAMIFL 600
BSNT_03588___ 601 NPHMEWIEKDHLPVFELEQKENDTDQGTGFNFPDIEGEKLSVAVEKFEAH 650
.||||.||:.||||||.|..|.: ||..:|||:||||||.||||||||
RBAM_022380__ 601 EPHMERIEQQHLPVFESELNEKN---GTQSDFPDVEGEKLSQAVEKFEAH 647
BSNT_03588___ 651 LIQQTLEKHHFNRTKTAKALGVSIRNLYYKMDKYGLANEGMQ 692
:||:|||||.||||||||||||||||||||||||||||:|||
RBAM_022380__ 648 VIQKTLEKHKFNRTKTAKALGVSIRNLYYKMDKYGLANDGMQ 689
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