Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03588 and RBAM_022380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_03588___bkdR.1.9828.seq
# -bsequence dna-align/RBAM_022380___bkdR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03588___bkdR-RBAM_022380___bkdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03588___bkdR-RBAM_022380___bkdR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03588___bkdR
# 2: RBAM_022380___bkdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2101
# Identity: 1640/2101 (78.1%)
# Similarity: 1640/2101 (78.1%)
# Gaps: 53/2101 ( 2.5%)
# Score: 6408.5
#
#
#=======================================
BSNT_03588___ 1 ATGCAAAAGGTACTGATAGTAGGTGCCGGCAAAAGGGGAACGGCGTTATT 50
|||||.|||||.|||||..|||||||.||.|||.|.||.||||||.|..|
RBAM_022380__ 1 ATGCAGAAGGTGCTGATTATAGGTGCTGGTAAAGGAGGCACGGCGCTCCT 50
BSNT_03588___ 51 ACATATTCTGATTAAAAC--AGCCATCATAGAT----ATCATTGCCGTAG 94
|||.|||.||||.||||| ||| .||| ||.|||||.||.|
RBAM_022380__ 51 ACAGATTTTGATGAAAACAAAGC------TGATCCGGATTATTGCGGTGG 94
BSNT_03588___ 95 TTGACAAAGACCCCGAGGCGCCGGGATTGAAAGAAGC----AGAACAGTA 140
||||..||||.||.|||||||..||..||.||||||| ||| ||
RBAM_022380__ 95 TTGATCAAGATCCGGAGGCGCAAGGGCTGCAAGAAGCCCGGAGA----TA 140
BSNT_03588___ 141 TGGGATTGCCGTATCATCTGATTGGAAACCTTACATA---CAACAAAAAC 187
|||.|||||....|||||.|||||||||||.|||||| .||.|.|.|
RBAM_022380__ 141 TGGAATTGCAACCTCATCAGATTGGAAACCCTACATAACTGAAGATATA- 189
BSNT_03588___ 188 CGGATATCGTCATTCATACTACCGGCGATCAAGCCGTGTTTGACGAGCTC 237
|||||..||||.|||||.||.||||||.||||.||..|.||.|||||.
RBAM_022380__ 190 --GATATTATCATCCATACAACAGGCGATAAAGCGGTCATGGATGAGCTG 237
BSNT_03588___ 238 CTTCA-AAGAAAGCATGAAGATACCATTGTCATGCCGGGAAAAATGGCAT 286
||.|| .||||| .|.|||.|.|||||.|||||||||||||||.||||.|
RBAM_022380__ 238 CTCCATGAGAAA-AAAGAACAAACCATCGTCATGCCGGGAAAATTGGCGT 286
BSNT_03588___ 287 ACATCGTTTTTCAGCTGATGGAAGAAAAGCAGCACCTGATTCAAATGCTA 336
||||.||.||||||||||||||.|||||.|||||.||.||.||||||||.
RBAM_022380__ 287 ACATGGTGTTTCAGCTGATGGAGGAAAAACAGCAGCTTATCCAAATGCTG 336
BSNT_03588___ 337 AAAGAGCAAACCTATAAATATGACAGAATTTTTAATTCCACCCATGATGG 386
||...|||.||.|||||..|||||.|.|||||||||||.||.||.||.||
RBAM_022380__ 337 AAGTCGCAGACGTATAAGCATGACCGGATTTTTAATTCAACGCACGACGG 386
BSNT_03588___ 387 AATGATTTTTATTGATATCAATGAAGAAATCATTCTCTTTAACCATATGG 436
.|||||||||||.||..||||.|||...||||||.|.|||||.||.||||
RBAM_022380__ 387 CATGATTTTTATAGACGTCAACGAAACGATCATTTTATTTAATCAGATGG 436
BSNT_03588___ 437 CCGAAAAAATGGTCGGGAAAAAACGTGAGGAAGTCATTGGGCGCCCAATA 486
|.||||||||||||||..|||||||.|||||.|||||.||.||||.|||.
RBAM_022380__ 437 CAGAAAAAATGGTCGGCCAAAAACGGGAGGATGTCATCGGCCGCCAAATT 486
BSNT_03588___ 487 AAAGAAGTGATTCCGAGCACGAAGATGCCGCGGATTTTAAAAACAAGAGT 536
|||||.||..|.||||.|||.|||.|||||||||||.|..||||.||||.
RBAM_022380__ 487 AAAGATGTAGTGCCGAACACAAAGCTGCCGCGGATTCTGGAAACGAGAGA 536
BSNT_03588___ 537 GCCTGAATACAACCAGAAGCAGCTGTTAGGCGATCATTTGCAAATTGTGA 586
|||.|||||.||||||||||||||..|.||..|.||..||||.|||||.|
RBAM_022380__ 537 GCCGGAATATAACCAGAAGCAGCTTCTCGGAAAGCACCTGCAGATTGTCA 586
BSNT_03588___ 587 CCACAAGGCTGCCGATTATTGATGAAGGCGGACGTCTGCTCGGGGCTCTT 636
|.|||||.||||||||.|||||||||||||||...||.|||||.||..|.
RBAM_022380__ 587 CGACAAGACTGCCGATCATTGATGAAGGCGGAAAACTTCTCGGCGCGTTA 636
BSNT_03588___ 637 TGTGTTTTTAAAGATATCACTGATGCGGTCGAGCTGGCAGAGGAAGTGAC 686
||.||.||||||||||||||.||.||.||.||.|||||.||.||.||.||
RBAM_022380__ 637 TGCGTGTTTAAAGATATCACCGACGCAGTTGAACTGGCGGAAGAGGTCAC 686
BSNT_03588___ 687 CAACTTAAAGCAGGTCCGTACGATGCTGGAGGCAATTATTCAATCCTCCG 736
.||||||||.||..||||.||.|||||.||.||.|||||.|||||.||.|
RBAM_022380__ 687 GAACTTAAAACAAATCCGCACCATGCTTGAAGCGATTATACAATCATCAG 736
BSNT_03588___ 737 ATGAGGCGATTTCTGTCGTTGATGAAAACGGCATCGGCCTGCTAATCAAT 786
|.|||||.|||||||||||||||||||||||||||||..||.|||||||.
RBAM_022380__ 737 ACGAGGCCATTTCTGTCGTTGATGAAAACGGCATCGGAATGTTAATCAAC 786
BSNT_03588___ 787 AAAGCGTATACGAAAATGACGGGGCTTTCTGAAAAAGAAGTCATCGGCAA 836
|||||||||||.||||||||.|||||.||.||||..|||||||||||.||
RBAM_022380__ 787 AAAGCGTATACAAAAATGACCGGGCTGTCAGAAAGCGAAGTCATCGGAAA 836
BSNT_03588___ 837 GCCTGCAAACACTGATATTTCCGAAGGCGAAAGCATGCATTTAAAGGTGC 886
.||.||...|||.|||||.||.|||||.||.||||||||..|.||.||..
RBAM_022380__ 837 ACCCGCTTCCACCGATATCTCAGAAGGGGAGAGCATGCACCTGAAAGTAT 886
BSNT_03588___ 887 TTGAAACAAGACGTCCTGTCCGCGGTGTCAGAATGAAGGTCGGCCCGAAT 936
|.|..|||||.||.||.||.||.|||||.|||||||||||||||||.|||
RBAM_022380__ 887 TGGGGACAAGGCGGCCCGTGCGGGGTGTGAGAATGAAGGTCGGCCCCAAT 936
BSNT_03588___ 937 GAAAAAGAAGTGATCGTTAATGTAGCACCGGTGATTGTGGACGGGATTTT 986
.||||.||.||.|||||.|||||.||.||.||.|||||||||||.|||||
RBAM_022380__ 937 AAAAAGGATGTTATCGTAAATGTTGCCCCCGTTATTGTGGACGGTATTTT 986
BSNT_03588___ 987 GAAAGGCAGCGTCGGCGTGATTCACGATGTTTCCGAAATTAAAATGCTGA 1036
.|||||.|||||||||||.||.|||||.||.||.||||||||||.|||||
RBAM_022380__ 987 AAAAGGTAGCGTCGGCGTCATCCACGACGTGTCAGAAATTAAAACGCTGA 1036
BSNT_03588___ 1037 CAGCGGAGCTTAAT----CGCGCCAGACAAATTATTCGCACGCTTGAAGC 1082
|.||.|||||.||| |||||||| ||.||.||||||||||||||
RBAM_022380__ 1037 CTGCTGAGCTGAATCGGGCGCGCCAG----ATCATCCGCACGCTTGAAGC 1082
BSNT_03588___ 1083 GAAATACACGTTTGACGACATTATCGGCAAAAGCGAGCAAATGCTGGTTG 1132
|||||||||||||||||||||||||||||..||.||.|||||||||||.|
RBAM_022380__ 1083 GAAATACACGTTTGACGACATTATCGGCACGAGTGAACAAATGCTGGTCG 1132
BSNT_03588___ 1133 CGCTTGAGCAGGCGAAGCTCGGTGCGAAAACACCGGCAACCATCTTGCTG 1182
|.|||||.||||||||||||||.||||||||.|||||.||.||..|||||
RBAM_022380__ 1133 CCCTTGAACAGGCGAAGCTCGGGGCGAAAACGCCGGCGACGATTCTGCTG 1182
BSNT_03588___ 1183 CGCGGGGAATCAGGAACAGGAAAAGAACTGTTCGCCCATGCCATCCATAA 1232
||.||.|||||.||.||||||||||||||.||||||||.|||||||||||
RBAM_022380__ 1183 CGGGGAGAATCCGGCACAGGAAAAGAACTTTTCGCCCACGCCATCCATAA 1232
BSNT_03588___ 1233 CGAAAGTGACCGGAAATACAATAAATTTATTCGCGTGAATTGTGCAGCCC 1282
.|||||.|||||.|||||||||||.||.||.||.||.||||||||.||||
RBAM_022380__ 1233 TGAAAGCGACCGAAAATACAATAAGTTCATCCGGGTCAATTGTGCCGCCC 1282
BSNT_03588___ 1283 TTTCTGAAAACCTGCTCGAATCAGAATTGTTCGGCTATGAGGATGGCGCG 1332
|.||||||..||||||.|||||.||..|.||||||||||||||.||||||
RBAM_022380__ 1283 TGTCTGAATCCCTGCTAGAATCCGAGCTTTTCGGCTATGAGGAAGGCGCG 1332
BSNT_03588___ 1333 TTTTCAGGAGCGAAGCGCGGCGGTAAAAAGGGTTTATTTGAGGAAGCAAA 1382
|||.|.||.||||.||||||.||.|||||.||..|.|||||||||||.||
RBAM_022380__ 1333 TTTACGGGCGCGAGGCGCGGGGGCAAAAAAGGACTTTTTGAGGAAGCGAA 1382
BSNT_03588___ 1383 TAACGGCAGTATTTTCTTAGATGAAATCGGTGAGCTGACACAAAATATGC 1432
|||||||||.||||||||||||||||||||.||||||||.||||..|..|
RBAM_022380__ 1383 TAACGGCAGCATTTTCTTAGATGAAATCGGAGAGCTGACCCAAAGCACCC 1432
BSNT_03588___ 1433 AGGCCAAATTGCTACGCGTCCTTCAAGAAAAGGAAATCGTCAGAGTGGGC 1482
||||.||..||||..|.||.||.||.|||||.|||||..|||||||.|||
RBAM_022380__ 1433 AGGCAAAGCTGCTCAGAGTTCTGCAGGAAAAAGAAATTATCAGAGTCGGC 1482
BSNT_03588___ 1483 GGCACGAAAGCGATCCCTGTCAATGTCAGAGTGATCGCGGCGACAAATGT 1532
|||.|.||||||||..||||||||||||||.|.|||||.||||||||.||
RBAM_022380__ 1483 GGCGCTAAAGCGATTTCTGTCAATGTCAGAATTATCGCAGCGACAAACGT 1532
BSNT_03588___ 1533 AAATATTGAAAAGGCGATGGCGGACGGAACATTCCGGGAAGACCTGTATT 1582
.||.||.||||||||.||||||||.||..|.|||||.|||||||||||||
RBAM_022380__ 1533 CAACATCGAAAAGGCCATGGCGGAAGGCGCGTTCCGTGAAGACCTGTATT 1582
BSNT_03588___ 1583 ACCGGATCAACCGCTATCCGATCTCCATCCCGCCTTTGCGGCAGCGGTTG 1632
|||||||.|||||||||||||||||.||||||||..|.||||||||....
RBAM_022380__ 1583 ACCGGATTAACCGCTATCCGATCTCAATCCCGCCGCTTCGGCAGCGCAAA 1632
BSNT_03588___ 1633 GAGGACATTGAAGCATTGAGCGTCAGACTTATCCAAAAGATCAACCGGGA 1682
||.||.||||||||..|||||.|..|.||.||..||||.|||||.|.|||
RBAM_022380__ 1633 GAAGATATTGAAGCGCTGAGCATTCGGCTCATTGAAAAAATCAATCAGGA 1682
BSNT_03588___ 1683 TTACGGCAGGAATGTAAAAGGGCTCTCACAGCAAGCCTTGCGCGCCTTAT 1732
|||||||.|.||||||||.||||||.|.|.|.|.||..||||.||.||||
RBAM_022380__ 1683 TTACGGCCGCAATGTAAAGGGGCTCACGCCGAACGCGCTGCGAGCTTTAT 1732
BSNT_03588___ 1733 CTGCCTACCATTGGCCTGGGAATGTCCGGGAGCTTGAAAATGTCCTTGGA 1782
|.||||||...|||||.||.||.||||||||||||||||||||.||.|||
RBAM_022380__ 1733 CAGCCTACAGCTGGCCGGGAAACGTCCGGGAGCTTGAAAATGTTCTCGGA 1782
BSNT_03588___ 1783 CGAGCCATGATTTTTCTGAATCCGCATATGGAATGGATTGAAAAAGATCA 1832
||.||.|||||.|||.|..|.|||||.||||||.||||.|||.|..|.||
RBAM_022380__ 1783 CGGGCAATGATATTTTTAGAGCCGCACATGGAACGGATCGAACAGCAGCA 1832
BSNT_03588___ 1833 CTTGCCTGTATTCGAACTTGAGCAAAAAGAAAATGACACAGATCAGGGAA 1882
..|||||||.||.|||...||||.|||.|||||..|| ||.|
RBAM_022380__ 1833 TCTGCCTGTTTTTGAATCAGAGCTAAATGAAAAAAAC---------GGCA 1873
BSNT_03588___ 1883 C----AGGTTTTAATTTTCCGGATATTGAAGGCGAAAAGCTGTCTGTCGC 1928
| || |.|||||||||||.|.|||||.||||||||||||...||
RBAM_022380__ 1874 CCCAAAG----TGATTTTCCGGATGTGGAAGGGGAAAAGCTGTCTCAGGC 1919
BSNT_03588___ 1929 AGTAGAAAAATTTGAAGCGCATTTGATCCAGCAAACGCTTGAAAAGCATC 1978
.||.|||||||||||||||||..|.||.||..|||||||||||||||||.
RBAM_022380__ 1920 TGTTGAAAAATTTGAAGCGCACGTCATTCAAAAAACGCTTGAAAAGCATA 1969
BSNT_03588___ 1979 ATTTTAACCGGACAAAAACAGCAAAAGCTCTCGGTGTCAGCATTCGGAAC 2028
|.||.|||||.||.|||||.||||||||.||.|||||||||||||||||.
RBAM_022380__ 1970 AATTCAACCGAACCAAAACGGCAAAAGCGCTTGGTGTCAGCATTCGGAAT 2019
BSNT_03588___ 2029 TTATATTACAAAATGGATAAATATGGCCTTGCAAATGAAGGCATGCAATA 2078
.|.||.|||||||||||.||.||.||||||||||||||.|||||||||||
RBAM_022380__ 2020 CTGTACTACAAAATGGACAAGTACGGCCTTGCAAATGACGGCATGCAATA 2069
BSNT_03588___ 2079 A 2079
|
RBAM_022380__ 2070 A 2070
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