Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03553 and RBAM_022200

See DNA alignment / Visit BSNT_03553 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence pep-align/BSNT_03553___yqjG.1.9828.seq
#    -bsequence pep-align/RBAM_022200___yqjG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03553___yqjG-RBAM_022200___yqjG.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03553___yqjG-RBAM_022200___yqjG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03553___yqjG
# 2: RBAM_022200___yqjG
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 278
# Identity:     224/278 (80.6%)
# Similarity:   249/278 (89.6%)
# Gaps:           3/278 ( 1.1%)
# Score: 1170.5
# 
#
#=======================================

BSNT_03553___      1 MLKTYQKLLAMGIFLIVLCSGNAAFAATN--QVGGLSNVGFFHDYLIEPF     48
                     |.|||||.:|.|:|.||||:|.:|||||:  |.|||.|:||||||||:||
RBAM_022200__      1 MSKTYQKWIAFGLFFIVLCTGRSAFAATSQTQTGGLGNIGFFHDYLIDPF     50

BSNT_03553___     49 SALLKGVAGLFHGEYGLSIILVTIIVRIVVLPLFVNQFKKQRIFQEKMAV     98
                     ||||||||||||||||||||||||||||||||||||||||||:|||||||
RBAM_022200__     51 SALLKGVAGLFHGEYGLSIILVTIIVRIVVLPLFVNQFKKQRVFQEKMAV    100

BSNT_03553___     99 IKPQVDSIQVKLKKTKDPEKQKELQMEMMKLYQENNINPLAMGCLPMLIQ    148
                     |||||||||.|:|:|||.||||||||||||||:|:|:||:||||||||:|
RBAM_022200__    101 IKPQVDSIQAKMKQTKDAEKQKELQMEMMKLYREHNLNPMAMGCLPMLVQ    150

BSNT_03553___    149 SPIMIGLYYAIRSTPEIASHSFLWFSLGQSDILMSLSAGIMYFVQAYIAQ    198
                     .||:||.|||||||||||||||||||||.||||:||.||.|||:||||:|
RBAM_022200__    151 FPILIGFYYAIRSTPEIASHSFLWFSLGHSDILVSLCAGAMYFLQAYISQ    200

BSNT_03553___    199 KLSAKYSAVPQNPAAQQSAKLMVFIFPVMMTIFSLNVPAALPLYWFTSGL    248
                     ||:.|||...|||||.||||:||||||||||:||||||||||||||||||
RBAM_022200__    201 KLNEKYSPAAQNPAAMQSAKIMVFIFPVMMTVFSLNVPAALPLYWFTSGL    250

BSNT_03553___    249 FLTVQNIVLQMTHHKSKKTAALTESVK-    275
                     ||||||::||.||||.|:.||..|..| 
RBAM_022200__    251 FLTVQNVLLQQTHHKKKQAAAQAEPAKS    278


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.