Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03553 and RBAM_022200

See Amino acid alignment / Visit BSNT_03553 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence dna-align/BSNT_03553___yqjG.1.9828.seq
#    -bsequence dna-align/RBAM_022200___yqjG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03553___yqjG-RBAM_022200___yqjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03553___yqjG-RBAM_022200___yqjG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03553___yqjG
# 2: RBAM_022200___yqjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     635/850 (74.7%)
# Similarity:   635/850 (74.7%)
# Gaps:          35/850 ( 4.1%)
# Score: 2344.0
# 
#
#=======================================

BSNT_03553___      1 TTGTTAAAAACATATCAAAAACTTTTGGCTATG-----GGTATCTTTTTG     45
                     ||||..|||||||||||||||    |||.| ||     ||..|.|||||.
RBAM_022200__      1 TTGTCTAAAACATATCAAAAA----TGGAT-TGCATTCGGATTGTTTTTT     45

BSNT_03553___     46 ATCGTATTATGCTCGGGCAATGCT--GCATTTGCAGCGAC------TAAT     87
                     ||||||.|.|||.|.|||  .|||  ||.|||||||||||      .|.|
RBAM_022200__     46 ATCGTACTGTGCACAGGC--CGCTCGGCTTTTGCAGCGACATCTCAGACT     93

BSNT_03553___     88 CAGGTGGGAGGCCTCAGCAACGTAGGTTTTTTCCACGATTATTTAATCGA    137
                     |||..||||||||||.|.||..|.||.||||||||||||||..|.|||||
RBAM_022200__     94 CAGACGGGAGGCCTCGGGAATATCGGGTTTTTCCACGATTACCTGATCGA    143

BSNT_03553___    138 ACCGTTTTCCGCTCTGCTTAAGGGTGTTGCCGGGCTGTTTCACGGAGAAT    187
                     .||||||||.||.||..|.||.|||||.||.||.|||||.|||||.||.|
RBAM_022200__    144 TCCGTTTTCGGCACTTTTAAAAGGTGTGGCGGGCCTGTTCCACGGTGAGT    193

BSNT_03553___    188 ACGGACTCTCTATTATCCTCGTAACCATTATTGTGCGTATAGTTGTATTG    237
                     |||||.|.||.|||||.||.||.||.|||||.||.||.||.|||||||||
RBAM_022200__    194 ACGGATTGTCGATTATTCTGGTGACGATTATCGTCCGGATCGTTGTATTG    243

BSNT_03553___    238 CCTTTGTTTGTCAATCAGTTCAAAAAACAGCGCATCTTCCAAGAGAAAAT    287
                     |||||||||||.||.||.||.||.||||||||..|.|||||.||.|||||
RBAM_022200__    244 CCTTTGTTTGTGAACCAATTTAAGAAACAGCGGGTGTTCCAGGAAAAAAT    293

BSNT_03553___    288 GGCCGTTATTAAACCTCAGGTTGACAGTATCCAGGTTAAATTGAAAAAGA    337
                     |||.||.||.|||||.|||||.|||||.||.||||.||||.|||||.|.|
RBAM_022200__    294 GGCTGTGATCAAACCGCAGGTCGACAGCATTCAGGCTAAAATGAAACAAA    343

BSNT_03553___    338 CGAAGGACCCTGAAAAACAAAAAGAGCTGCAAATGGAAATGATGAAGCTG    387
                     ||||.||..|.||.|||||||||||.|||||||||||||||||||||||.
RBAM_022200__    344 CGAAAGATGCGGAGAAACAAAAAGAACTGCAAATGGAAATGATGAAGCTT    393

BSNT_03553___    388 TATCAAGAGAACAACATCAATCCGCTTGCGATGGGCTGTCTTCCAATGCT    437
                     ||.|..|||.||||..|.||||||.|.||.|||||.||||||||.|||||
RBAM_022200__    394 TACCGTGAGCACAATCTGAATCCGATGGCAATGGGATGTCTTCCGATGCT    443

BSNT_03553___    438 GATTCAGTCTCCGATTATGATTGGGCTTTATTACGCGATTCGCTCAACAC    487
                     |.|.||.|..||||||.||||.||..|||||||.||.||.||||||||.|
RBAM_022200__    444 GGTGCAATTCCCGATTTTGATCGGTTTTTATTATGCCATCCGCTCAACGC    493

BSNT_03553___    488 CTGAAATTGCGTCACACTCGTTTCTATGGTTCAGTTTAGGGCAATCTGAT    537
                     |.|||||.||.||||||||.|||||.||||||||.||||||||.||||||
RBAM_022200__    494 CGGAAATCGCTTCACACTCATTTCTGTGGTTCAGCTTAGGGCATTCTGAT    543

BSNT_03553___    538 ATTCTCATGTCCCTTAGTGCAGGGATTATGTATTTTGTCCAAGCCTATAT    587
                     |||||..|.||.||..|.||.|||...||||||||..|.||.||.|||||
RBAM_022200__    544 ATTCTTGTATCACTGTGCGCGGGGGCCATGTATTTCTTACAGGCTTATAT    593

BSNT_03553___    588 CGCTCAAAAACTGAGCGCGAAATATT---CCGCTGTCCCGCAAAACCCAG    634
                     ..|.||||||.|.|.||.||||||||   |.||||   |.|||||.||.|
RBAM_022200__    594 TTCCCAAAAATTAAACGAGAAATATTCACCGGCTG---CTCAAAATCCGG    640

BSNT_03553___    635 CGGCACAGCAATCCGCAAAATTGATGGTGTTCATCTTCCCTGTAATGATG    684
                     |.||...|||.||.||||||.|.|||||.||.||.||||||||.||||||
RBAM_022200__    641 CCGCGATGCAGTCAGCAAAAATCATGGTCTTTATTTTCCCTGTCATGATG    690

BSNT_03553___    685 ACGATTTTCTCGCTTAATGTTCCGGCAGCCCTTCCCCTGTACTGGTTTAC    734
                     ||..||||.||.|||||.||.|||||.||.||.||.||.|||||||||||
RBAM_022200__    691 ACCGTTTTTTCACTTAACGTACCGGCTGCGCTGCCGCTTTACTGGTTTAC    740

BSNT_03553___    735 AAGCGGACTGTTTTTGACAGTGCAAAACATCGTCCTT---CAGATGACGC    781
                     ||||||||||||||||||||||||.||   .||.|||   |||..|||||
RBAM_022200__    741 AAGCGGACTGTTTTTGACAGTGCAGAA---TGTACTTTTACAGCAGACGC    787

BSNT_03553___    782 ATCATAAAAGTAAAAAAACAGCCGCTCTTACTGAGTCGGTGAAATAA---    828
                     |||||||||..|||.||.|.||.||||...|.|||.|.|..||||.|   
RBAM_022200__    788 ATCATAAAAAGAAACAAGCTGCGGCTCAGGCGGAGCCCGCCAAATCATAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03553 and RBAM_022200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
