Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03536 and RBAM_021910

See DNA alignment / Visit BSNT_03536 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence pep-align/BSNT_03536___yqjQ.1.9828.seq
#    -bsequence pep-align/RBAM_021910___yqjQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03536___yqjQ-RBAM_021910___yqjQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03536___yqjQ-RBAM_021910___yqjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03536___yqjQ
# 2: RBAM_021910___yqjQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     192/259 (74.1%)
# Similarity:   213/259 (82.2%)
# Gaps:           1/259 ( 0.4%)
# Score: 974.0
# 
#
#=======================================

BSNT_03536___      1 MKHIAGKRIWITGASGGLGERIAYLCAAEGAHVLLSARREDRLIEIKRKI     50
                     |..:..|||||||||||||||:||.||||||||.|||||||||.|:|:.|
RBAM_021910__      1 MSRLTDKRIWITGASGGLGERLAYSCAAEGAHVFLSARREDRLQEVKKTI     50

BSNT_03536___     51 TEEWSGQCEIFPLDVGRLEDIARVRDQIGSVDVLINNAGFGIFETVLDST    100
                     | ...|||::.|.||...|:...||..||.|||||||||||||||..||:
RBAM_021910__     51 T-ACGGQCDVVPFDVRYAEEAENVRRLIGHVDVLINNAGFGIFETAADSS     99

BSNT_03536___    101 LDDMKAMFDVNVFGLIACTKAVLPQMLEQKKGHIINIASQAGKIATPKSS    150
                     ||||||||:||||||||||||.||.||..|.||||||||||||:||||||
RBAM_021910__    100 LDDMKAMFEVNVFGLIACTKACLPVMLHAKSGHIINIASQAGKLATPKSS    149

BSNT_03536___    151 LYSATKHAVLGYSNALRMELSGTGIYVTTVNPGPIQTDFFSIADKGGDYA    200
                     |||||||||||||||||:||:|||:.|||||||||:||||:||||.|.|.
RBAM_021910__    150 LYSATKHAVLGYSNALRLELAGTGVAVTTVNPGPIKTDFFTIADKEGGYV    199

BSNT_03536___    201 KNVGRWMLDPDDVAAQITAAIFTKKREINLPRLMNAGTKLYQLFPALVEK    250
                     |:|||||||.|.||.:||:.|.|.|||:||||.|:.|||||||||:..||
RBAM_021910__    200 KSVGRWMLDADHVAERITSVILTDKREMNLPRWMSLGTKLYQLFPSFTEK    249

BSNT_03536___    251 LAGRAFMKK    259
                     |||||..||
RBAM_021910__    250 LAGRALKKK    258


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