Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03536 and RBAM_021910

See Amino acid alignment / Visit BSNT_03536 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03536___yqjQ.1.9828.seq
#    -bsequence dna-align/RBAM_021910___yqjQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03536___yqjQ-RBAM_021910___yqjQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03536___yqjQ-RBAM_021910___yqjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03536___yqjQ
# 2: RBAM_021910___yqjQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity:     556/811 (68.6%)
# Similarity:   556/811 (68.6%)
# Gaps:          65/811 ( 8.0%)
# Score: 1797.5
# 
#
#=======================================

BSNT_03536___      1 GTGAAACATA-TAGCGGGAAAAAGGATTTGGATAACCGGCGCTTCAGGAG     49
                     .|| |.||.| ||.|||..||..||||||||||.|||||.||.||.||.|
RBAM_021910__      1 ATG-AGCAGATTAACGGATAAGCGGATTTGGATCACCGGAGCATCCGGCG     49

BSNT_03536___     50 GGCTTGGTGAAAGAATCGCATACTTATGCGCGGCTGAAGGAGCCCATGTC     99
                     |.||.||.|||.|..|.|||||.|..||||||||.|||||.||.|||||.
RBAM_021910__     50 GACTCGGAGAACGGCTTGCATATTCTTGCGCGGCAGAAGGGGCTCATGTT     99

BSNT_03536___    100 CTGCTGTCGGCTAGACGCGAGGATCGTTTGATAGAAATCAAAAGGAAAAT    149
                     .|..|.||.||.||.||.|||||.||.|||...|||.|.||||.||..||
RBAM_021910__    100 TTTTTATCCGCCAGGCGGGAGGACCGCTTGCAGGAAGTGAAAAAGACGAT    149

BSNT_03536___    150 AACCGAGGAATGGAGCGGACAGTGTGAGATTTTTCCTCTGGATGTC----    195
                     .||||.|   ||..|||||||||||||..|..||||..|.||.|||    
RBAM_021910__    150 TACCGCG---TGCGGCGGACAGTGTGATGTCGTTCCGTTTGACGTCCGGT    196

BSNT_03536___    196 ----------GGCCG----CCTAGAGGATATTGCCCGGGTCCGCGATCAG    231
                               |||.|    |.|| |||...||                 |
RBAM_021910__    197 ATGCAGAAGAGGCTGAAAACGTA-AGGCGTTT-----------------G    228

BSNT_03536___    232 ATCGGCTC-GGTTGATGTACTGATTAACAATGCGGGCTTCGGTATATTTG    280
                     ||||| || .|||||.|||.|.||.|||||.||.||||||||.||.||||
RBAM_021910__    229 ATCGG-TCATGTTGACGTATTAATCAACAACGCCGGCTTCGGCATTTTTG    277

BSNT_03536___    281 AAACGG----TTTTAGACTCTACATTGGATGACATGAAAGCGATGTTTGA    326
                     ||||||    |    ||.||..|.||||||||.|||||.||.||||||||
RBAM_021910__    278 AAACGGCCGCT----GATTCATCTTTGGATGATATGAAGGCAATGTTTGA    323

BSNT_03536___    327 TGTGAATGTCTTCGGCCTGATCGCCTGTACAAAAGCGGTG-CTTCCGCAA    375
                     .||.||.||||||||..|.|||||||||||.||.|| .|| |||||....
RBAM_021910__    324 AGTCAACGTCTTCGGATTAATCGCCTGTACGAAGGC-CTGTCTTCCTGTG    372

BSNT_03536___    376 ATGCTTGA-GCAAAAAAAG-GGACATATCATCAATATCGCCTCTCAAGCG    423
                     ||||||.| ||  .||||| ||.|||||.||||||||||||||.||.||.
RBAM_021910__    373 ATGCTTCATGC--GAAAAGCGGCCATATTATCAATATCGCCTCACAGGCC    420

BSNT_03536___    424 GGGAAAATCGCAACACCGAAGTCTAGCCTGTATTCCGCTACCAAACATGC    473
                     ||.|||.|.||.||.|||||.||.|||||.|||||.||.||.||.||.||
RBAM_021910__    421 GGCAAATTGGCGACGCCGAAATCAAGCCTTTATTCTGCAACGAAGCACGC    470

BSNT_03536___    474 CGTGTTAGGTTACTCAAACGCTTTGCGGATGGAGCTTTCGGGAACCGGCA    523
                     |||||||||.||.||.||.||..|||||.|.|||||..|.||.||.||  
RBAM_021910__    471 CGTGTTAGGGTATTCCAATGCGCTGCGGCTTGAGCTGGCCGGTACGGG--    518

BSNT_03536___    524 TTTA--TGTGACAACAGTCAACCCGGGACCGATTCAGACGGACTTTTTTT    571
                     |.||  |||||||||.||.||.||.||.|||||..|.||.|||||.|||.
RBAM_021910__    519 TGTAGCTGTGACAACGGTTAATCCCGGTCCGATCAAAACAGACTTCTTTA    568

BSNT_03536___    572 CCATTGCTGATAAAGGCGGGGACTACGCCAAAAATGTCGGCCGCTGGATG    621
                     |.|||||.|||||||..||.|..||.|..||||..||||||.|.||||||
RBAM_021910__    569 CAATTGCAGATAAAGAGGGCGGTTATGTGAAAAGCGTCGGCAGATGGATG    618

BSNT_03536___    622 CTTGATCCTGATGACGTAGCAGCTCAAATTACAGCTGCAATTTTTACGAA    671
                     ||||||.|.||..|.||.||||..|..||||||.|.|..|||.|.|||.|
RBAM_021910__    619 CTTGATGCCGACCATGTGGCAGAGCGCATTACATCCGTGATTCTGACGGA    668

BSNT_03536___    672 AAAGCGGGAGATCAATCTTCCGCGTTTAATGAATGC--CGGCACTAAGCT    719
                     .||.|||||.||.|||||||||||.|..||||  ||  |||.||.|||||
RBAM_021910__    669 TAAACGGGAAATGAATCTTCCGCGATGGATGA--GCCTCGGGACGAAGCT    716

BSNT_03536___    720 GTATCAGCTGTTTCCAGCTCTTGTAGAAAAGCTGGCAGGACGCGCGTTCA    769
                     |||||||||.||.|||.|..||..||||||.|||||.||.|||||.||.|
RBAM_021910__    717 GTATCAGCTTTTCCCATCGTTTACAGAAAAACTGGCCGGCCGCGCATTAA    766

BSNT_03536___    770 TGAAAAAATAA    780
                     .||||||.|||
RBAM_021910__    767 AGAAAAAGTAA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03536 and RBAM_021910

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
