Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03532 and RBAM_021880

See DNA alignment / Visit BSNT_03532 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence pep-align/BSNT_03532___yqjT.1.9828.seq
#    -bsequence pep-align/RBAM_021880___yqjT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03532___yqjT-RBAM_021880___yqjT.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03532___yqjT-RBAM_021880___yqjT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03532___yqjT
# 2: RBAM_021880___yqjT
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 130
# Identity:      97/130 (74.6%)
# Similarity:   109/130 (83.8%)
# Gaps:           2/130 ( 1.5%)
# Score: 538.0
# 
#
#=======================================

BSNT_03532___      1 -MHHIELYVSDLEASRRFWGWFLKELGYKEYQKWSSGISWKKDRFYLVIV     49
                      |||||||||||:||.|||||||.||||:|:|.|.||||||...||:|:|
RBAM_021880__      1 MMHHIELYVSDLKASARFWGWFLGELGYREFQNWDSGISWKNAGFYVVLV     50

BSNT_03532___     50 QAKEPFLEPEYHRCRVGLNHLAFHAESKLQVDQMTEKLTAKGYRVLYRER     99
                     |.:|.||.|||||||||||||||||.|:.|||:|||||.|:|..||||:|
RBAM_021880__     51 QTEERFLTPEYHRCRVGLNHLAFHAASREQVDEMTEKLLARGCPVLYRDR    100

BSNT_03532___    100 HPFAGGDGHYAVYCEDPDRIKVELVAPSC-    128
                     ||:|||..|||||.|||||||||||||:. 
RBAM_021880__    101 HPYAGGSTHYAVYTEDPDRIKVELVAPASE    130


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.