Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03532 and RBAM_021880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03532___yqjT.1.9828.seq
# -bsequence dna-align/RBAM_021880___yqjT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03532___yqjT-RBAM_021880___yqjT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03532___yqjT-RBAM_021880___yqjT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03532___yqjT
# 2: RBAM_021880___yqjT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 397
# Identity: 277/397 (69.8%)
# Similarity: 277/397 (69.8%)
# Gaps: 14/397 ( 3.5%)
# Score: 929.0
#
#
#=======================================
BSNT_03532___ 1 ---GTGCATCATATCGAACTGTATGTCTCTGATTTGGAGGCGTCTAGGCG 47
.||||||||||.||..|||||||.|||||.|||.|.||.||....||
RBAM_021880__ 1 ATGATGCATCATATTGAGTTGTATGTATCTGACTTGAAAGCCTCCGCCCG 50
BSNT_03532___ 48 GTTTTGGGGATGGTTCTTAAAAGAACTTGGCTATAAAGAGTATCAAAAAT 97
|||||||||||||||.|||...||.||.||.||||..||.|.||||||.|
RBAM_021880__ 51 GTTTTGGGGATGGTTTTTAGGTGAGCTCGGTTATAGGGAATTTCAAAATT 100
BSNT_03532___ 98 GGAGCTCAGGCATCAGCTGGAAGAAAGATCGTTTTTACCTAGTGATTGTG 147
||..|||.||||||||||||||.||.|...|.|||||..|.|||.||||.
RBAM_021880__ 101 GGGACTCCGGCATCAGCTGGAAAAACGCAGGATTTTATGTTGTGCTTGTA 150
BSNT_03532___ 148 CAGGCGAAAGAGCCATTTCTAGAGCCGGAATACCATAGATGCCGAGTCGG 197
|||.|..|.||||..|||.||...|||||.|||||.||||||||.|||||
RBAM_021880__ 151 CAGACAGAGGAGCGTTTTTTAACACCGGAGTACCACAGATGCCGGGTCGG 200
BSNT_03532___ 198 TCTGAACCATCTCGCATTTCATGCTGAATCCA---AGCTTCAAGTCGATC 244
.|||||||||||.||.||||||||||.|||.| || ||.||.||..
RBAM_021880__ 201 GCTGAACCATCTGGCTTTTCATGCTGCATCAAGAGAG---CAGGTTGACG 247
BSNT_03532___ 245 AGATGACTGAAAAATTGACGGCAAAAGGTTATCGTGTGTTGTACCGAGAG 294
|||||||.|||||..||...||.|.|||.|..|..|||.|.|||.|.||.
RBAM_021880__ 248 AGATGACAGAAAAGCTGCTTGCCAGAGGATGCCCCGTGCTTTACAGGGAC 297
BSNT_03532___ 295 AGGCATCCTTTTGCCGGAGGAGACGGGCATTATGCAGTCTATTGTGAGGA 344
.|.|||||.|.|||.||.|||..|..||||||.||.||.||....|||||
RBAM_021880__ 298 CGCCATCCATATGCAGGCGGAAGCACGCATTACGCCGTATACACGGAGGA 347
BSNT_03532___ 345 TCCGGACCGGATTAAGGTAGAGCTCGTTGCCCCAAGCTGTTAA---- 387
.|||||.|||||.||.||.|||||||||||.|| .|||..|.|
RBAM_021880__ 348 CCCGGATCGGATAAAAGTGGAGCTCGTTGCGCC-TGCTTCTGAATGA 393
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