Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03522 and RBAM_021800

See DNA alignment / Visit BSNT_03522 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence pep-align/BSNT_03522___yqkA.1.9828.seq
#    -bsequence pep-align/RBAM_021800___yqkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03522___yqkA-RBAM_021800___yqkA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03522___yqkA-RBAM_021800___yqkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03522___yqkA
# 2: RBAM_021800___yqkA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     185/343 (53.9%)
# Similarity:   227/343 (66.2%)
# Gaps:          27/343 ( 7.9%)
# Score: 966.0
# 
#
#=======================================

BSNT_03522___      1 MIEFLQHKEDTIAREILAVQIPAYIKETEIIGFDGIPALQEKVKDIQASH     50
                     ||.||||.:...||||.|||..||.||.|:|||.|||||.|...|||.|.
RBAM_021800__      1 MITFLQHTQGQTAREIAAVQRCAYQKEAELIGFFGIPALHETPDDIQRSR     50

BSNT_03522___     51 ERFAGYRKNGKLIGVISYEKNMHHLTICRLVVHPDGFRKGIGRALLQFVI    100
                     |.|||:::..:|.|||||||..:.|.||||.|||.||||||||||:||||
RBAM_021800__     51 ETFAGFKEKDQLAGVISYEKKGYDLVICRLTVHPSGFRKGIGRALIQFVI    100

BSNT_03522___    101 DHNEDAEKIEVVTAENNTPAVSLYTQAGFQKAETVKAAQGLLLSVFHLYP    150
                     |.|.||:|||..||..|.||||||.:.||.:|..::..:||.||.|||||
RBAM_021800__    101 DQNRDAQKIEAATASQNVPAVSLYLKTGFTEAGQIETPEGLTLSFFHLYP    150

BSNT_03522___    151 KRKVEIILYNEKWAECFDEEKERLKLVFGPEIIAVHHIGSTSIPNMAAKP    200
                     |||.|::.|..:|.|.|:.||..|..:|||.:.:|.||||||||.|||||
RBAM_021800__    151 KRKAEVVPYKPEWKEMFEREKADLIRIFGPALHSVSHIGSTSIPGMAAKP    200

BSNT_03522___    201 IIDMLIEVRSIEAVSQFDEQMKANGYTPKGENGIAGRRYFQKGGNKRTHH    250
                     :||:|.||:.|....:|..|::|.||..||||||.|||:||||||:||||
RBAM_021800__    201 VIDILAEVKDISDADRFSPQLEALGYEAKGENGIEGRRFFQKGGNRRTHH    250

BSNT_03522___    251 VHMYEQGNPAIERHLLFRDYLRAHPNIAKEYAVLKKQLAAQHPDSINQYI    300
                     ||:||.|:|.::|||||||||.|.|..|.:|..||:.||..:|..:.:|.
RBAM_021800__    251 VHIYETGHPDVKRHLLFRDYLTAKPEKAAQYMELKRHLAKTYPYDMAKYS    300

BSNT_03522___    301 QGKDEWIKTAEENAKRWKKGRNNANGSIVCYNSENDENGGFTL    343
                     :||::|||.||:.||.                           
RBAM_021800__    301 EGKNDWIKAAEQEAKD---------------------------    316


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