Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03522 and RBAM_021800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03522___yqkA.1.9828.seq
# -bsequence dna-align/RBAM_021800___yqkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03522___yqkA-RBAM_021800___yqkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03522___yqkA-RBAM_021800___yqkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03522___yqkA
# 2: RBAM_021800___yqkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1128
# Identity: 639/1128 (56.6%)
# Similarity: 639/1128 (56.6%)
# Gaps: 273/1128 (24.2%)
# Score: 1691.0
#
#
#=======================================
BSNT_03522___ 1 ATGATTGAATTTCTCCAGCAT----AAGGA-AGACACTATAGCGCGTGAG 45
.|||||..||||.|.|||||| ||||| |||| .|||||.||.
RBAM_021800__ 1 TTGATTACATTTTTACAGCATACACAAGGACAGAC-----CGCGCGGGAA 45
BSNT_03522___ 46 ATTTTAGCCGTACAGATCCCCGCCTA-CATAAAGGAAACAGAGATTATCG 94
|||...||.||.|||..|..|||.|| || |||.|||.|.|||.|.||||
RBAM_021800__ 46 ATTGCGGCGGTTCAGCGCTGCGCTTATCA-AAAAGAAGCCGAGCTGATCG 94
BSNT_03522___ 95 GTTTTGACGGTATTCCCGCTTTACAAGAGAAGGTGA--------AGGATA 136
|.|||..|||.||||||||..|.|| ||| |.||||
RBAM_021800__ 95 GCTTTTTCGGCATTCCCGCCCTGCA--------TGAAACACCCGATGATA 136
BSNT_03522___ 137 TTCAAGC-ATCCCATGAGCGGTTTGCGGGATATC--GGAAAAACGGCAAG 183
|.| ||| .||.|..|||..||||||.|| |.|| |||||||
RBAM_021800__ 137 TAC-AGCGGTCACGGGAGACGTTTGCCGG-TTTCAAGGAAAAA------- 177
BSNT_03522___ 184 CTGATC--------GGTGTCATTTCATATGAGAAAAA--CATGCATCATC 223
|||| ||.||||||||.|||||.||||| .|| ||.|.|
RBAM_021800__ 178 --GATCAGCTTGCAGGCGTCATTTCGTATGAAAAAAAGGGAT--ATGACC 223
BSNT_03522___ 224 TCACCATTTGCAGGCTTGTTGTGCATCCTGACGG-TTTCAGAAAAGGAAT 272
|...|||.||||||||....|||||.||...||| |||| |.||||||||
RBAM_021800__ 224 TTGTCATATGCAGGCTGACGGTGCACCCGTCCGGCTTTC-GGAAAGGAAT 272
BSNT_03522___ 273 TGGACGAGCGCTTCTGCAATTTGTCATTGATCATAATGAAGACGCTGAGA 322
.|||||.||||||.|.||||||||.||.|||||.||....|||||..|.|
RBAM_021800__ 273 CGGACGGGCGCTTATTCAATTTGTGATAGATCAAAACCGGGACGCCCAAA 322
BSNT_03522___ 323 AAATCGAAGTAGTCACAGCCGAGAACAATAC--CCCGGCTGTGTCACTCT 370
||||.||.|..|..||.||| || .|||.|| .|||||.||.||.||||
RBAM_021800__ 323 AAATAGAGGCGGCTACCGCC-AG-CCAAAACGTTCCGGCAGTCTCTCTCT 370
BSNT_03522___ 371 ATACACAGGCCGGATTC-CAAAAGGC--------AGAAACCGTCAAAGCA 411
||..|.|..||||.||| ||.|||.| |||.|| ||
RBAM_021800__ 371 ATTTAAAAACCGGGTTCACAGAAGCCGGACAGATAGAGAC-------GC- 412
BSNT_03522___ 412 GCGCAGGGTCTATTGCTGTCGGTCTTTCATTTGTATCCGAAAAGAAAAGT 461
||.|.||.||....||.|||.|.||||||.|.||||||||.||.||||.
RBAM_021800__ 413 -CGGAAGGGCTGACCCTCTCGTTTTTTCATCTTTATCCGAAGAGGAAAGC 461
BSNT_03522___ 462 TGAGATCATTCTCTACAA--CGAAAAATGGGCAG-AATGTTTCGATGAAG 508
.||..|..|||..||||| || .|||||..|| ||||||| |
RBAM_021800__ 462 GGAAGTTGTTCCGTACAAGCCG--GAATGGAAAGAAATGTTT-------G 502
BSNT_03522___ 509 AAAAAGA-ACGGCTGAAACTTG-------TGTTCGGGCCGGAG------A 544
|||.||| |.|||.| ||||| |.|||||.|| || |
RBAM_021800__ 503 AAAGAGAGAAGGCGG--ACTTGATCCGAATCTTCGGCCC--AGCACTTCA 548
BSNT_03522___ 545 TTATCGCTGTTCA-TCACATCGGAAGCACATCAATACCGAACATGGCAGC 593
|| ||| ||| .||||||||.|||||.||.||.|||...|||||.||
RBAM_021800__ 549 TT----CTG-TCAGCCACATCGGCAGCACCTCTATCCCGGGGATGGCCGC 593
BSNT_03522___ 594 GAAGCCAATCATTGATAT----------GTTAATTGAAGTCAGAAGCATT 633
.||.||..||||.||||| ||||| ||| .|||
RBAM_021800__ 594 CAAACCCGTCATCGATATACTGGCGGAGGTTAA--------AGA--TATT 633
BSNT_03522___ 634 ---GAAGCCGTGAGCCAATTTGATGAACAAATGAAGGCCAACGGCTATAC 680
||.|| ||| ||.|||...|...||..||.|.||...|||||||..
RBAM_021800__ 634 TCGGACGC--TGA-CCGATTCAGTCCGCAGCTGGAAGCACTCGGCTATGA 680
BSNT_03522___ 681 ACCAAAAGGTGAGAACGGTATAGCGGGCAGGCGTTATTTCCAAAAGGGCG 730
..|||||||.||.|||||.||||.||||.||||||..||.|||||.||||
RBAM_021800__ 681 GGCAAAAGGGGAAAACGGGATAGAGGGCCGGCGTTTCTTTCAAAAAGGCG 730
BSNT_03522___ 731 GAAATAAACGCACTCATCATGTCCATATGTACG-AACAGGGAAACCCTGC 779
|.||.|..|||||.||.||.||.||.||.|||| |||||||.|.|| |.
RBAM_021800__ 731 GCAACAGGCGCACACACCACGTTCACATATACGAAACAGGGCATCC--GG 778
BSNT_03522___ 780 TATTGAA-AGGCATCTGTTATTCAGAGATTATCTCAGAGCTCATCCAAAC 828
...|||| .|.||||||.|.|||.|.|||||.||||..| |
RBAM_021800__ 779 ACGTGAAGCGTCATCTGCTGTTCCGGGATTACCTCACCG----------C 818
BSNT_03522___ 829 ATAGC--GAAAGAATACGCCGTTCTCAAAAAACAGCTGG--------CGG 868
|.||| |||| |.||.|.|| ||.||| ||| |||
RBAM_021800__ 819 AAAGCCTGAAA----AAGCGGCTC----AATACA--TGGAACTGAAACGG 858
BSNT_03522___ 869 CCCAGCACCCT--GACA---GCAT---------CAATCAGTATATACAAG 904
||.|.|.|| |||| .||| ||| ||||||...|||
RBAM_021800__ 859 --CACCTCGCTAAGACATACCCATACGATATGGCAA--AGTATAGTGAAG 904
BSNT_03522___ 905 GGAAAGATGAGTGGATCAAGACTGCAGAAGAAAATGCGAAGCGGTGGAAA 954
|||||.||||.|||||||||.|.||.|||.||.|.||.|| |||..
RBAM_021800__ 905 GGAAAAATGACTGGATCAAGGCGGCTGAACAAGAGGCAAA-----GGACT 949
BSNT_03522___ 955 AAAGGCAGAAACAATGCGAATGGCAGTATTGTATGCTACAATAGCGAAAA 1004
||
RBAM_021800__ 950 AA------------------------------------------------ 951
BSNT_03522___ 1005 TGATGAAAACGGGGGTTTCACCTTATGA 1032
RBAM_021800__ 951 ---------------------------- 951
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