Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03520 and RBAM_021790

See DNA alignment / Visit BSNT_03520 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence pep-align/BSNT_03520___yqkB.1.9828.seq
#    -bsequence pep-align/RBAM_021790___yqkB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03520___yqkB-RBAM_021790___yqkB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03520___yqkB-RBAM_021790___yqkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03520___yqkB
# 2: RBAM_021790___yqkB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 120
# Identity:      94/120 (78.3%)
# Similarity:   100/120 (83.3%)
# Gaps:          13/120 (10.8%)
# Score: 498.0
# 
#
#=======================================

BSNT_03520___      1 MNIHVTDAAKQALQQAFDANPGKKAQLRYDAEGCGCAVSGVPTIWLAEEL     50
                     |.||||||||..||||.||||||||||||||||||||||||||||||:||
RBAM_021790__      1 MQIHVTDAAKHTLQQAMDANPGKKAQLRYDAEGCGCAVSGVPTIWLADEL     50

BSNT_03520___     51 TGQCEQLETNGIPLYIQSSQKVFFDDQMTIDYNEKAKTLALKSPAEMLSP    100
                     |||||.:||||:|||||:||.||||::||||||||||||.||||||||||
RBAM_021790__     51 TGQCEAIETNGLPLYIQTSQTVFFDEEMTIDYNEKAKTLVLKSPAEMLSP    100

BSNT_03520___    101 RMSILVK-------------    107
                     |||||||             
RBAM_021790__    101 RMSILVKQGETESESKAESH    120


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.