Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03520 and RBAM_021790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03520___yqkB.1.9828.seq
# -bsequence dna-align/RBAM_021790___yqkB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03520___yqkB-RBAM_021790___yqkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03520___yqkB-RBAM_021790___yqkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03520___yqkB
# 2: RBAM_021790___yqkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity: 269/369 (72.9%)
# Similarity: 269/369 (72.9%)
# Gaps: 51/369 (13.8%)
# Score: 1105.0
#
#
#=======================================
BSNT_03520___ 1 ATGAACATACATGTGACAGATGCAGCAAAACAGGCACTGCAGCAGGCGTT 50
|||.|.|||||||||||.|||||.||.|||||..||||.||||||||..|
RBAM_021790__ 1 ATGCAAATACATGTGACGGATGCGGCGAAACACACACTTCAGCAGGCAAT 50
BSNT_03520___ 51 TGACGCCAACCCGGGAAAAAAAGCCCAGCTTCGTTACGATGCAGAAGGAT 100
.||||||||||||||.||||||||.|||||.||.||.||.||||||||.|
RBAM_021790__ 51 GGACGCCAACCCGGGGAAAAAAGCGCAGCTCCGCTATGACGCAGAAGGCT 100
BSNT_03520___ 101 GCGGCTGCGCGGTAAGCGGTGTCCCGACAATCTGGCTGGCAGAAGAATTA 150
||||.||||||||.|||||.||.|||||.|||||||||||.||.||||||
RBAM_021790__ 101 GCGGGTGCGCGGTGAGCGGCGTGCCGACCATCTGGCTGGCGGACGAATTA 150
BSNT_03520___ 151 ACGGGACAGTGCGAGCAGC--TGGAAACGAACGGCATTCCGCTGTATATC 198
||||||||.||||| ||| |.|||||.|||||..|||||||.||.|||
RBAM_021790__ 151 ACGGGACAATGCGA--AGCCATTGAAACCAACGGACTTCCGCTTTACATC 198
BSNT_03520___ 199 CAATCGTCGCAAAAAGTGTTTTTTGACGATCAAATGACGATCGATTACAA 248
||..|.||.||||.|||||||||||||||..|||||||.|||||||||||
RBAM_021790__ 199 CAGACCTCACAAACAGTGTTTTTTGACGAGGAAATGACAATCGATTACAA 248
BSNT_03520___ 249 TGAAAAAGCCAAAACATTGGCGC----TGAAAAGCCCGGCTGAAATGCTC 294
||||||.||.||||| ||.| |.|||||||||||.||.|||||.
RBAM_021790__ 249 TGAAAAGGCAAAAAC----GCTCGTCTTAAAAAGCCCGGCAGAGATGCTG 294
BSNT_03520___ 295 AGCCCCAGAATGAGCATATTAGTAAAGTAG-------------------- 324
|||||.|||||||||||||||||||||.||
RBAM_021790__ 295 AGCCCGAGAATGAGCATATTAGTAAAGCAGGGAGAAACGGAAAGTGAATC 344
BSNT_03520___ 324 ------------------- 324
RBAM_021790__ 345 AAAAGCTGAAAGCCATTAA 363
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