Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03517 and RBAM_021770

See DNA alignment / Visit BSNT_03517 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence pep-align/BSNT_03517___yqkD.1.9828.seq
#    -bsequence pep-align/RBAM_021770___yqkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03517___yqkD
# 2: RBAM_021770___yqkD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 312
# Identity:     197/312 (63.1%)
# Similarity:   248/312 (79.5%)
# Gaps:           9/312 ( 2.9%)
# Score: 1089.0
# 
#
#=======================================

BSNT_03517___      1 ------MKKILLAIGALVTAVIAIGIVFSNMILFIKKKTDEDIIKRETDN     44
                           :||.|...|:.....:|.|..|:|:|:|:||||||||:|:||.:
RBAM_021770__      1 MKGGACVKKWLAVFGSACAVFLAAGFAFTNLIMFMKKKTDEDIMKKETAD     50

BSNT_03517___     45 GHDVFESFEQMEKTAFVIPSAYGYDIKGYHVAPHDTPNTIIICHGVTMNV     94
                     |||.|:||:.|||...||.|.:||:|||::||||.|.||:|||||||:|.
RBAM_021770__     51 GHDRFDSFQAMEKEEAVILSRHGYEIKGFYVAPHHTANTMIICHGVTVNS    100

BSNT_03517___     95 LNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSWL    144
                     .||||||.||||||||||:||||.||:|||:|||||::|||||.:.|:|:
RBAM_021770__    101 FNSLKYMDLFLDLGWNVLVYDHRGHGKSGGRTTSYGYFEKDDLEEAVNWV    150

BSNT_03517___    145 KNKTNHCGLIGIHGESMGAVTALLYAGAHCSD-GADFYIADCPFACFDEQ    193
                     ::||...|.||||||||||||||||||.|..: ||||||||||||.|.:|
RBAM_021770__    151 RHKTGDGGQIGIHGESMGAVTALLYAGGHQDENGADFYIADCPFASFRDQ    200

BSNT_03517___    194 LAYRLRADYRLPSWPLLPIADFFLKLRGGYRAREVSPLAVIDKIEKPILF    243
                     |||||:.::|||.|||||:|||||::|.|||.|:||||:||.:|.:|:||
RBAM_021770__    201 LAYRLKREFRLPPWPLLPLADFFLRMREGYRIRDVSPLSVISRIRQPVLF    250

BSNT_03517___    244 IHSKDDDYIPVSSTERLYEKKRGPKALYIAENGEHAMSYTKNRDTYRKTV    293
                     ||||:|||||.:.:|.|:.:|||||.||:||:|.||||||||.::|||.|
RBAM_021770__    251 IHSKEDDYIPSACSELLHRRKRGPKMLYLAESGGHAMSYTKNPESYRKAV    300

BSNT_03517___    294 QEFLDNMNDSTE    305
                     |.|||.|..:  
RBAM_021770__    301 QTFLDTMTQT--    310


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