Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03517 and RBAM_021770

See Amino acid alignment / Visit BSNT_03517 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03517___yqkD.1.9828.seq
#    -bsequence dna-align/RBAM_021770___yqkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03517___yqkD
# 2: RBAM_021770___yqkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity:     643/1000 (64.3%)
# Similarity:   643/1000 (64.3%)
# Gaps:         149/1000 (14.9%)
# Score: 1977.0
# 
#
#=======================================

BSNT_03517___      1 ------------------TTGAAGAAAATCCTTTTGGCCATTGGCGCT-C     31
                                       .||||.|||       ||||   |||||.| .
RBAM_021770__      1 ATGAAAGGAGGTGCCTGTGTGAAAAAA-------TGGC---TGGCGGTGT     40

BSNT_03517___     32 TCGTAACAGCTGTCAT-CGCAAT------------CGGAATTGTTTTTTC     68
                     |||...|.|||    | ||||.|            ||||.|.|.||||.|
RBAM_021770__     41 TCGGTTCGGCT----TGCGCAGTCTTTTTGGCTGCCGGATTCGCTTTTAC     86

BSNT_03517___     69 AAATATGATTCTATTCATCAAGAAAAAAACGGATGAAGACATTATCAAAA    118
                     .|||.|||||.|.||.||.||||||||.|||||||||||.||.||.||||
RBAM_021770__     87 GAATCTGATTATGTTTATGAAGAAAAAGACGGATGAAGATATCATGAAAA    136

BSNT_03517___    119 GAGAGACAGACAACGGACATGATGTGTTTGAATCATTTGAGCAAATGGAG    168
                     .|||.||.|...||||.||||||...|||||.||.|||.||...||||| 
RBAM_021770__    137 AAGAAACGGCGGACGGGCATGATAGATTTGATTCCTTTCAGGCCATGGA-    185

BSNT_03517___    169 AAAA-------CCGCTTTTGTGATACCCTC-CGCTTACGGGTATGACATA    210
                     ||||       ||      ||.||.|..|| ||| .||||||||||.||.
RBAM_021770__    186 AAAAGAAGAGGCC------GTCATCCTGTCACGC-CACGGGTATGAGATC    228

BSNT_03517___    211 AAAGGATACCATGTCGCACCGCATGACACACCAAACACTATCATCATCTG    260
                     |||||.|...|.|||||.||||||.|.||..|||||||.||.||.||.||
RBAM_021770__    229 AAAGGCTTTTACGTCGCCCCGCATCATACGGCAAACACCATGATTATTTG    278

BSNT_03517___    261 CCACGGGGTGACGATGAATGTGCTGAATTCTCTTAAGTATATGCATTTAT    310
                     .|||||.||.||..|.|||..|.|.|||||..|.||.||.|||.||||||
RBAM_021770__    279 TCACGGCGTTACCGTAAATTCGTTCAATTCATTGAAATACATGGATTTAT    328

BSNT_03517___    311 TTCTTGATCTCGGCTGGAATGTGCTCATTTATGACCACCGCCGGCATGGC    360
                     ||.|.|||.|.||.||||||||||||.|.||||||||||||.||||.||.
RBAM_021770__    329 TTTTAGATTTAGGATGGAATGTGCTCGTATATGACCACCGCGGGCACGGA    378

BSNT_03517___    361 CAAAGCGGCGGAAAGACGACCAGCTACGG--ATTTTACGAAAAGGATGAT    408
                     .||||||||||.|..|||||.||||||||  |||||  |||||.||||||
RBAM_021770__    379 AAAAGCGGCGGCAGAACGACGAGCTACGGCTATTTT--GAAAAAGATGAT    426

BSNT_03517___    409 CT-CAATAAGGTTGTCAGCTGGCTCAAAAACAAAACAAATCATTGCGGAT    457
                     .| .||.|| |..||.|..|||.|.|.|.|||||||         |||| 
RBAM_021770__    427 TTGGAAGAA-GCCGTGAATTGGGTGAGACACAAAAC---------CGGA-    465

BSNT_03517___    458 TG-----------ATCGGAATTCACGGTGAGTCGATGGGAGCTGTGACCG    496
                      |           |||||.||.|||||.||.|||||||||||.|||||.|
RBAM_021770__    466 -GACGGCGGTCAAATCGGCATCCACGGGGAATCGATGGGAGCGGTGACGG    514

BSNT_03517___    497 CCCTGCTTTACGCTGGTGCACACTGCAGCGAT------GGCGCTGATTTT    540
                     ||.|..|.|||||.||.|..||  .||| |||      ||||||||||||
RBAM_021770__    515 CCTTATTATACGCGGGCGGGCA--TCAG-GATGAAAACGGCGCTGATTTT    561

BSNT_03517___    541 TATATTGCCGATTGTCCGTTCGCATGTTTTGATGAGCAGCTTGCCTACCG    590
                     ||||||||.||.||||||||||||.|.|||...||.|||||.||||||.|
RBAM_021770__    562 TATATTGCGGACTGTCCGTTCGCAAGCTTTCGCGATCAGCTCGCCTACAG    611

BSNT_03517___    591 GCTGAGAGC-GGATTACAGGCTCCCGTCTTGGCCCCTGCTCCCTATCGCC    639
                     ||||| ||| |||.|.|.||||.||..|.|||||.||.||.|||.|.||.
RBAM_021770__    612 GCTGA-AGCGGGAGTTCCGGCTGCCTCCGTGGCCGCTTCTGCCTTTGGCT    660

BSNT_03517___    640 GACTTCTTTTTGAAGCTGAGGGGCGGCTATCGCGCACGTGAAGTATCTCC    689
                     ||.|||||||||..|.||||.|..||.||.||....|||||.|||||.| 
RBAM_021770__    661 GATTTCTTTTTGCGGATGAGAGAAGGATACCGTATCCGTGATGTATCGC-    709

BSNT_03517___    690 GCTTGCTGTCATTGATAA----AATCGAAAAGCCGATCCTCTTTATTCAC    735
                      |||  |.||..|.||.|    ||||....||||..|.||.|||||||||
RBAM_021770__    710 -CTT--TATCGGTTATCAGCCGAATCCGGCAGCCCGTGCTGTTTATTCAC    756

BSNT_03517___    736 AGTAAGGATGATGACTACATTCC-------TGTTTCTTCAACCGA---GC    775
                     ||||||||.|||||.||.||.||       ||||       ||||   ||
RBAM_021770__    757 AGTAAGGAAGATGATTATATACCCTCCGCTTGTT-------CCGAATTGC    799

BSNT_03517___    776 GGCTTTATGAAA----AG-AAACGCGGGCCGAAAGCGCTGTACATTGCCG    820
                     .||        |    || ||||||||.||.||...|||.||..|.||||
RBAM_021770__    800 TGC--------ACCGCAGAAAACGCGGCCCTAAGATGCTCTATCTGGCCG    841

BSNT_03517___    821 AGAACGGTGA--ACACGCCATGTCATATACCAAAAATCGGGATACGTACC    868
                     | |.||| ||  .||.||||||||.||.||||||||||.|||.|..||||
RBAM_021770__    842 A-ATCGG-GAGGGCATGCCATGTCGTACACCAAAAATCCGGAGAGCTACC    889

BSNT_03517___    869 GAAAAACAGTGCAGGAGTTTTTAGACAACATGAATGATTCAACAGAATAA    918
                     |.|||.|.||.||....||||||||.|.|||||...|   |||..||   
RBAM_021770__    890 GTAAAGCCGTTCAAACCTTTTTAGATACCATGACGCA---AACGTAA---    933


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