Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03517 and RBAM_021770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03517___yqkD.1.9828.seq
# -bsequence dna-align/RBAM_021770___yqkD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03517___yqkD-RBAM_021770___yqkD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03517___yqkD
# 2: RBAM_021770___yqkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity: 643/1000 (64.3%)
# Similarity: 643/1000 (64.3%)
# Gaps: 149/1000 (14.9%)
# Score: 1977.0
#
#
#=======================================
BSNT_03517___ 1 ------------------TTGAAGAAAATCCTTTTGGCCATTGGCGCT-C 31
.||||.||| |||| |||||.| .
RBAM_021770__ 1 ATGAAAGGAGGTGCCTGTGTGAAAAAA-------TGGC---TGGCGGTGT 40
BSNT_03517___ 32 TCGTAACAGCTGTCAT-CGCAAT------------CGGAATTGTTTTTTC 68
|||...|.||| | ||||.| ||||.|.|.||||.|
RBAM_021770__ 41 TCGGTTCGGCT----TGCGCAGTCTTTTTGGCTGCCGGATTCGCTTTTAC 86
BSNT_03517___ 69 AAATATGATTCTATTCATCAAGAAAAAAACGGATGAAGACATTATCAAAA 118
.|||.|||||.|.||.||.||||||||.|||||||||||.||.||.||||
RBAM_021770__ 87 GAATCTGATTATGTTTATGAAGAAAAAGACGGATGAAGATATCATGAAAA 136
BSNT_03517___ 119 GAGAGACAGACAACGGACATGATGTGTTTGAATCATTTGAGCAAATGGAG 168
.|||.||.|...||||.||||||...|||||.||.|||.||...|||||
RBAM_021770__ 137 AAGAAACGGCGGACGGGCATGATAGATTTGATTCCTTTCAGGCCATGGA- 185
BSNT_03517___ 169 AAAA-------CCGCTTTTGTGATACCCTC-CGCTTACGGGTATGACATA 210
|||| || ||.||.|..|| ||| .||||||||||.||.
RBAM_021770__ 186 AAAAGAAGAGGCC------GTCATCCTGTCACGC-CACGGGTATGAGATC 228
BSNT_03517___ 211 AAAGGATACCATGTCGCACCGCATGACACACCAAACACTATCATCATCTG 260
|||||.|...|.|||||.||||||.|.||..|||||||.||.||.||.||
RBAM_021770__ 229 AAAGGCTTTTACGTCGCCCCGCATCATACGGCAAACACCATGATTATTTG 278
BSNT_03517___ 261 CCACGGGGTGACGATGAATGTGCTGAATTCTCTTAAGTATATGCATTTAT 310
.|||||.||.||..|.|||..|.|.|||||..|.||.||.|||.||||||
RBAM_021770__ 279 TCACGGCGTTACCGTAAATTCGTTCAATTCATTGAAATACATGGATTTAT 328
BSNT_03517___ 311 TTCTTGATCTCGGCTGGAATGTGCTCATTTATGACCACCGCCGGCATGGC 360
||.|.|||.|.||.||||||||||||.|.||||||||||||.||||.||.
RBAM_021770__ 329 TTTTAGATTTAGGATGGAATGTGCTCGTATATGACCACCGCGGGCACGGA 378
BSNT_03517___ 361 CAAAGCGGCGGAAAGACGACCAGCTACGG--ATTTTACGAAAAGGATGAT 408
.||||||||||.|..|||||.|||||||| ||||| |||||.||||||
RBAM_021770__ 379 AAAAGCGGCGGCAGAACGACGAGCTACGGCTATTTT--GAAAAAGATGAT 426
BSNT_03517___ 409 CT-CAATAAGGTTGTCAGCTGGCTCAAAAACAAAACAAATCATTGCGGAT 457
.| .||.|| |..||.|..|||.|.|.|.||||||| ||||
RBAM_021770__ 427 TTGGAAGAA-GCCGTGAATTGGGTGAGACACAAAAC---------CGGA- 465
BSNT_03517___ 458 TG-----------ATCGGAATTCACGGTGAGTCGATGGGAGCTGTGACCG 496
| |||||.||.|||||.||.|||||||||||.|||||.|
RBAM_021770__ 466 -GACGGCGGTCAAATCGGCATCCACGGGGAATCGATGGGAGCGGTGACGG 514
BSNT_03517___ 497 CCCTGCTTTACGCTGGTGCACACTGCAGCGAT------GGCGCTGATTTT 540
||.|..|.|||||.||.|..|| .||| ||| ||||||||||||
RBAM_021770__ 515 CCTTATTATACGCGGGCGGGCA--TCAG-GATGAAAACGGCGCTGATTTT 561
BSNT_03517___ 541 TATATTGCCGATTGTCCGTTCGCATGTTTTGATGAGCAGCTTGCCTACCG 590
||||||||.||.||||||||||||.|.|||...||.|||||.||||||.|
RBAM_021770__ 562 TATATTGCGGACTGTCCGTTCGCAAGCTTTCGCGATCAGCTCGCCTACAG 611
BSNT_03517___ 591 GCTGAGAGC-GGATTACAGGCTCCCGTCTTGGCCCCTGCTCCCTATCGCC 639
||||| ||| |||.|.|.||||.||..|.|||||.||.||.|||.|.||.
RBAM_021770__ 612 GCTGA-AGCGGGAGTTCCGGCTGCCTCCGTGGCCGCTTCTGCCTTTGGCT 660
BSNT_03517___ 640 GACTTCTTTTTGAAGCTGAGGGGCGGCTATCGCGCACGTGAAGTATCTCC 689
||.|||||||||..|.||||.|..||.||.||....|||||.|||||.|
RBAM_021770__ 661 GATTTCTTTTTGCGGATGAGAGAAGGATACCGTATCCGTGATGTATCGC- 709
BSNT_03517___ 690 GCTTGCTGTCATTGATAA----AATCGAAAAGCCGATCCTCTTTATTCAC 735
||| |.||..|.||.| ||||....||||..|.||.|||||||||
RBAM_021770__ 710 -CTT--TATCGGTTATCAGCCGAATCCGGCAGCCCGTGCTGTTTATTCAC 756
BSNT_03517___ 736 AGTAAGGATGATGACTACATTCC-------TGTTTCTTCAACCGA---GC 775
||||||||.|||||.||.||.|| |||| |||| ||
RBAM_021770__ 757 AGTAAGGAAGATGATTATATACCCTCCGCTTGTT-------CCGAATTGC 799
BSNT_03517___ 776 GGCTTTATGAAA----AG-AAACGCGGGCCGAAAGCGCTGTACATTGCCG 820
.|| | || ||||||||.||.||...|||.||..|.||||
RBAM_021770__ 800 TGC--------ACCGCAGAAAACGCGGCCCTAAGATGCTCTATCTGGCCG 841
BSNT_03517___ 821 AGAACGGTGA--ACACGCCATGTCATATACCAAAAATCGGGATACGTACC 868
| |.||| || .||.||||||||.||.||||||||||.|||.|..||||
RBAM_021770__ 842 A-ATCGG-GAGGGCATGCCATGTCGTACACCAAAAATCCGGAGAGCTACC 889
BSNT_03517___ 869 GAAAAACAGTGCAGGAGTTTTTAGACAACATGAATGATTCAACAGAATAA 918
|.|||.|.||.||....||||||||.|.|||||...| |||..||
RBAM_021770__ 890 GTAAAGCCGTTCAAACCTTTTTAGATACCATGACGCA---AACGTAA--- 933
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