Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03504 and RBAM_021660

See DNA alignment / Visit BSNT_03504 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence pep-align/BSNT_03504___yqkK.1.9828.seq
#    -bsequence pep-align/RBAM_021660___yqkK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03504___yqkK
# 2: RBAM_021660___yqkK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 75
# Identity:      44/75 (58.7%)
# Similarity:    54/75 (72.0%)
# Gaps:           4/75 ( 5.3%)
# Score: 222.5
# 
#
#=======================================

BSNT_03504___      1 MAKSQAKKKREHRLRNGGRDVLLSRGSTPSFSTHERLTKSKKEILNKRKH     50
                     ||||:.||.|||..|||.||.:||||:.||||||||:||:||:.|.:.||
RBAM_021660__      1 MAKSKTKKMREHLKRNGMRDAVLSRGTAPSFSTHERVTKTKKDRLERIKH     50

BSNT_03504___     51 K--NPYDHTAVDDKDFFVPQKAA--     71
                     |  |||||.:.|...||:|:..|  
RBAM_021660__     51 KKRNPYDHRSDDGGSFFMPESRAFL     75


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.